Non-Coding RNA Search

rpigcb_1718.y1

Sequence:


               
               AGAAGCAGAAGATTCAGATTCTGATGATAACATAAAGAGAGGGAAACACATGGACTTTCT
GTCAGACTTTGAGATGATGTTGCAGCGGAAAAAGAGCATGAGTGGTAAGCGCAGGCGTAA
CCGAGATGGTGGTACTTTTATTAGTGATGCCGATGACGTTGTGAGCGCCATGATTGTCAA
GATGAATGAAGCTGCAGAGGAAGACAGACAGTTGAATAATCAAAAAAAGCCAGCACTAAA
AAAGTTAACATTATTACCTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAGCAGAAGATTCAGATTCTGATGATAACATAAAGAGAGGGAAACACATGGACTTTCT
GTCAGACTTTGAGATGATGTTGCAGCGGAAAAAGAGCATGAGTGGTAAGCGCAGGCGTAA
CCGAGATGGTGGTACTTTTATTAGTGATGCCGATGACGTTGTGAGCGCCATGATTGTCAA
GATGAATGAAGCTGCAGAGGAAGACAGACAGTTGAATAATCAAAAAAAGCCAGCACTAAA
AAAGTTAACATTATTACCTAC

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               49-200, gnl|bosTau2|chr2 (3808633-3808784)
               

               
               49-200, gnl|canFam2|chr19 (26125482-26125306)
               

               
               49-200, gnl|danRer3|chr15 (46905716-46905892)
               

               
               49-200, gnl|dasNov1|scaffold_59405 (40797-40972)
               

               
               49-200, gnl|galGal2|chr9 (735282-735458)
               

               
               49-200, gnl|hg17|chr2 (127969798-127969974)
               

               
               49-200, gnl|Hg17|chr2 (127969954-127969803)
               

               
               49-200, gnl|loxAfr1|scaffold_70378 (9464-9643)
               

               
               49-200, gnl|mm7|chr18 (32478507-32478338)
               

               
               49-200, gnl|Mm7|chr18 (32478351-32478502)
               

               
               49-200, gnl|monDom2|scaffold_24 (43499671-43499491)
               

               
               49-200, gnl|panTro1|chr13 (14087454-14087630)
               

               
               49-200, gnl|rheMac2|chr13 (133947628-133947804)
               

               
               49-200, gnl|rn3|chr18 (24534305-24534104)
               

               
               49-200, gnl|tetNig1|chrUn_random (135762495-135762327)
               

               
               49-200, gnl|xenTro1|scaffold_209 (1462670-1462494)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               49-200, gnl|bosTau2|chr2 (3808633-3808784)
               

               
               49-200, gnl|canFam2|chr19 (26125482-26125306)
               

               
               49-200, gnl|danRer3|chr15 (46905716-46905892)
               

               
               49-200, gnl|dasNov1|scaffold_59405 (40797-40972)
               

               
               49-200, gnl|galGal2|chr9 (735282-735458)
               

               
               49-200, gnl|hg17|chr2 (127969798-127969974)
               

               
               49-200, gnl|Hg17|chr2 (127969954-127969803)
               

               
               49-200, gnl|loxAfr1|scaffold_70378 (9464-9643)
               

               
               49-200, gnl|mm7|chr18 (32478507-32478338)
               

               
               49-200, gnl|Mm7|chr18 (32478351-32478502)
               

               
               49-200, gnl|monDom2|scaffold_24 (43499671-43499491)
               

               
               49-200, gnl|panTro1|chr13 (14087454-14087630)
               

               
               49-200, gnl|rheMac2|chr13 (133947628-133947804)
               

               
               49-200, gnl|rn3|chr18 (24534305-24534104)
               

               
               49-200, gnl|tetNig1|chrUn_random (135762495-135762327)
               

               
               49-200, gnl|xenTro1|scaffold_209 (1462670-1462494)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	49-200, gnl\|bosTau2\|chr2 (3808633-3808784)
	49-200, gnl\|canFam2\|chr19 (26125482-26125306)
	49-200, gnl\|danRer3\|chr15 (46905716-46905892)
	49-200, gnl\|dasNov1\|scaffold_59405 (40797-40972)
	49-200, gnl\|galGal2\|chr9 (735282-735458)
	49-200, gnl\|hg17\|chr2 (127969798-127969974)
	49-200, gnl\|Hg17\|chr2 (127969954-127969803)
	49-200, gnl\|loxAfr1\|scaffold_70378 (9464-9643)
	49-200, gnl\|mm7\|chr18 (32478507-32478338)
	49-200, gnl\|Mm7\|chr18 (32478351-32478502)
	49-200, gnl\|monDom2\|scaffold_24 (43499671-43499491)
	49-200, gnl\|panTro1\|chr13 (14087454-14087630)
	49-200, gnl\|rheMac2\|chr13 (133947628-133947804)
	49-200, gnl\|rn3\|chr18 (24534305-24534104)
	49-200, gnl\|tetNig1\|chrUn_random (135762495-135762327)
	49-200, gnl\|xenTro1\|scaffold_209 (1462670-1462494)