Non-Coding RNA Search

rpigcb_1767.y1

Sequence:


               
               TGGAGGTTTTTCTTCTCGGATGTGAGAGACATCGGGCTTGTAACATCCCGAGTCATTGGA
TGGTGGAGAAGCAGCCGCATGTGCGCTGGCTTCCTCTCTGGGTGATTCCAGAGAGCAATT
CGAGGACATGTCACTTGGGGAAAGCAGTGAAAGCTAGTTTTCGGGAAACAACAAATGAAA
GAAAAACATGTTTTCTTTGGCGTGCTCATCGAATGAGGCTCAAATGGGGGCTCTCCTGCC
AAACGCTGTGTGCGATGAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGGTTTTTCTTCTCGGATGTGAGAGACATCGGGCTTGTAACATCCCGAGTCATTGGA
TGGTGGAGAAGCAGCCGCATGTGCGCTGGCTTCCTCTCTGGGTGATTCCAGAGAGCAATT
CGAGGACATGTCACTTGGGGAAAGCAGTGAAAGCTAGTTTTCGGGAAACAACAAATGAAA
GAAAAACATGTTTTCTTTGGCGTGCTCATCGAATGAGGCTCAAATGGGGGCTCTCCTGCC
AAACGCTGTGTGCGATGAAGAGC

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               2-263, gnl|bosTau2|chr21 (36278431-36278170)
               

               
               2-263, gnl|canFam2|chr8 (4172806-4173200)
               

               
               2-263, gnl|dasNov1|scaffold_49898 (4501-4118)
               

               
               2-263, gnl|echTel1|scaffold_51963 (1151-1509)
               

               
               2-263, gnl|hg17|chr14 (91419941-91420371)
               

               
               2-263, gnl|Hg17|chr14 (91420298-91420015)
               

               
               2-263, gnl|loxAfr1|scaffold_27222 (31783-31357)
               

               
               2-263, gnl|mm7|chr12 (99257548-99257970)
               

               
               2-263, gnl|Mm7|chr12 (99257894-99257617)
               

               
               2-263, gnl|monDom2|scaffold_8 (29674730-29675147)
               

               
               2-263, gnl|oryCun1|scaffold_122270 (8882-8505)
               

               
               2-263, gnl|panTro1|chr15 (91795350-91795780)
               

               
               2-263, gnl|rheMac2|chr7 (155097313-155097737)
               

               
               2-263, gnl|rn3|chr6 (126035132-126035554)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-263, gnl|bosTau2|chr21 (36278431-36278170)
               

               
               2-263, gnl|canFam2|chr8 (4172806-4173200)
               

               
               2-263, gnl|dasNov1|scaffold_49898 (4501-4118)
               

               
               2-263, gnl|echTel1|scaffold_51963 (1151-1509)
               

               
               2-263, gnl|hg17|chr14 (91419941-91420371)
               

               
               2-263, gnl|Hg17|chr14 (91420298-91420015)
               

               
               2-263, gnl|loxAfr1|scaffold_27222 (31783-31357)
               

               
               2-263, gnl|mm7|chr12 (99257548-99257970)
               

               
               2-263, gnl|Mm7|chr12 (99257894-99257617)
               

               
               2-263, gnl|monDom2|scaffold_8 (29674730-29675147)
               

               
               2-263, gnl|oryCun1|scaffold_122270 (8882-8505)
               

               
               2-263, gnl|panTro1|chr15 (91795350-91795780)
               

               
               2-263, gnl|rheMac2|chr7 (155097313-155097737)
               

               
               2-263, gnl|rn3|chr6 (126035132-126035554)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-263, gnl\|bosTau2\|chr21 (36278431-36278170)
	2-263, gnl\|canFam2\|chr8 (4172806-4173200)
	2-263, gnl\|dasNov1\|scaffold_49898 (4501-4118)
	2-263, gnl\|echTel1\|scaffold_51963 (1151-1509)
	2-263, gnl\|hg17\|chr14 (91419941-91420371)
	2-263, gnl\|Hg17\|chr14 (91420298-91420015)
	2-263, gnl\|loxAfr1\|scaffold_27222 (31783-31357)
	2-263, gnl\|mm7\|chr12 (99257548-99257970)
	2-263, gnl\|Mm7\|chr12 (99257894-99257617)
	2-263, gnl\|monDom2\|scaffold_8 (29674730-29675147)
	2-263, gnl\|oryCun1\|scaffold_122270 (8882-8505)
	2-263, gnl\|panTro1\|chr15 (91795350-91795780)
	2-263, gnl\|rheMac2\|chr7 (155097313-155097737)
	2-263, gnl\|rn3\|chr6 (126035132-126035554)