Non-Coding RNA Search

rpigcb_17694.y1

Sequence:


               
               CGCCGCTCCTTCCCCGTGCTGCCGCCGCCGCCTCCTCGGGCGCCGCCGCTGCGAGCTCAG
CCGCCACTGGTCCGCGGACTTTGGGTGTCCGGGTTGAAGGTCGGTCCGGACGTCGGACCC
AGCTCGGTTCCCGGACTGTCCGGGCGGCAGCGGACGTCGCCGCCGCCGCCTCCTCGTCGC
CTCAGCCTGGCGTTTTGTTCCGAGAGACCCGAGAGGCGAGCGGAGCTGACAGTGATTTTG
ACAGTGATTTAAACCCGCTTTTGTTGTTGTTGGCTTTTCGTTGTTTGGTTTTGTGTGTTG
TGATTGTGTGTGGCGGTTTTTCCCCCGTGGTGCATTTTTTTAAATTGTGCTTTCTTTATT
TTTAAATTTTTTCCTTTTTTTTTTTGACCCCGTGAACGTTATTTTTTTAATTTTTTTTTT
TTTTTTGGTCGGGGCTTCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTG
TCTCTGAGGAAGACCCAGGGAACTGGATATCTAGCGAGAACTTCCTACGGCTTCCCCGGC
GCCTCGGGAAAATGGGAGCTGCTGCAAAGTTGGCGTTTGCCGTCTTTCTTATCTCTTGTT
CTTCAGGTGCTATACTTGGTAGATCAGAAACTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCGCTCCTTCCCCGTGCTGCCGCCGCCGCCTCCTCGGGCGCCGCCGCTGCGAGCTCAG
CCGCCACTGGTCCGCGGACTTTGGGTGTCCGGGTTGAAGGTCGGTCCGGACGTCGGACCC
AGCTCGGTTCCCGGACTGTCCGGGCGGCAGCGGACGTCGCCGCCGCCGCCTCCTCGTCGC
CTCAGCCTGGCGTTTTGTTCCGAGAGACCCGAGAGGCGAGCGGAGCTGACAGTGATTTTG
ACAGTGATTTAAACCCGCTTTTGTTGTTGTTGGCTTTTCGTTGTTTGGTTTTGTGTGTTG
TGATTGTGTGTGGCGGTTTTTCCCCCGTGGTGCATTTTTTTAAATTGTGCTTTCTTTATT
TTTAAATTTTTTCCTTTTTTTTTTTGACCCCGTGAACGTTATTTTTTTAATTTTTTTTTT
TTTTTTGGTCGGGGCTTCCGAATATGTTTTATGACGGTTGATTTTACACCAGGAGGTTTG
TCTCTGAGGAAGACCCAGGGAACTGGATATCTAGCGAGAACTTCCTACGGCTTCCCCGGC
GCCTCGGGAAAATGGGAGCTGCTGCAAAGTTGGCGTTTGCCGTCTTTCTTATCTCTTGTT
CTTCAGGTGCTATACTTGGTAGATCAGAAACTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C7H2_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C7H2_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-277, - strand, RNAz p=0.859391
               

               
               396-515, - strand, RNAz p=0.876998

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-277, - strand, RNAz p=0.859391
               

               
               396-515, - strand, RNAz p=0.876998

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-608, gnl|bosTau2|chr2 (31887188-31886599)
               

               
               1-608, gnl|Hg17|chr2 (148435916-148436510)
               

               
               1-608, gnl|Mm7|chr2 (48821559-48822139)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-608, gnl|bosTau2|chr2 (31887188-31886599)
               

               
               1-608, gnl|Hg17|chr2 (148435916-148436510)
               

               
               1-608, gnl|Mm7|chr2 (48821559-48822139)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	81-277, - strand, RNAz p=0.859391
	396-515, - strand, RNAz p=0.876998

	1-608, gnl\|bosTau2\|chr2 (31887188-31886599)
	1-608, gnl\|Hg17\|chr2 (148435916-148436510)
	1-608, gnl\|Mm7\|chr2 (48821559-48822139)