rpigcb_1808.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCACCTTCTGACGGTGCTGCTGAAATTGTTCAGTTACTGCGTGAAGGTGAAAGTCAATC GGCAGCAGCTGGTCAAGCTGGAAATGAACACTTTGAACGTCATGCTGGGGACTCTCAACC TGGCCCTGGTAGCTGAGCAGGAAAGCAAGGACAGTGGTGGTGCAGCTGTGGCCGAGCAGG TGCTCAGCATTATGGAGATCATTCTGGATGAGTCCAACGCTGAGCCCTTGAGTGAGGACA AGGGCAACCTCCTCCTGACAGGAGACAAAGATCAACTCGTGATGCTCTTGGACCAGATCA ATAGCACCTTTGTTCGCTCCAACCCTAGCGTGCTCCAGGGCCTGCTTCGCATCATCCCCT ACCTTTCCTTTGGCGAGGTGGAGAAGATGCAGATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCACCTTCTGACGGTGCTGCTGAAATTGTTCAGTTACTGCGTGAAGGTGAAAGTCAATC GGCAGCAGCTGGTCAAGCTGGAAATGAACACTTTGAACGTCATGCTGGGGACTCTCAACC TGGCCCTGGTAGCTGAGCAGGAAAGCAAGGACAGTGGTGGTGCAGCTGTGGCCGAGCAGG TGCTCAGCATTATGGAGATCATTCTGGATGAGTCCAACGCTGAGCCCTTGAGTGAGGACA AGGGCAACCTCCTCCTGACAGGAGACAAAGATCAACTCGTGATGCTCTTGGACCAGATCA ATAGCACCTTTGTTCGCTCCAACCCTAGCGTGCTCCAGGGCCTGCTTCGCATCATCCCCT ACCTTTCCTTTGGCGAGGTGGAGAAGATGCAGATC |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 277-395, - strand, RNAz p=0.505786 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 277-395, - strand, RNAz p=0.505786 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 14-123, gnl|bosTau2|chr2 (61012803-61012694) | |
| 14-123, gnl|canFam2|chr2 (82410252-82410113) | |
| 14-123, gnl|danRer3|chr23 (23286904-23287032) | |
| 14-123, gnl|echTel1|scaffold_323227 (116375-116240) | |
| 14-123, gnl|fr1|chrUn (192780661-192780546) | |
| 14-123, gnl|galGal2|chr21 (4417189-4417329) | |
| 14-123, gnl|hg17|chr1 (19167328-19167467) | |
| 14-123, gnl|Hg17|chr1 (19167453-19167344) | |
| 14-123, gnl|loxAfr1|scaffold_31624 (6353-6216) | |
| 14-123, gnl|mm7|chr4 (138849872-138849734) | |
| 14-123, gnl|Mm7|chr4 (138849745-138849854) | |
| 14-123, gnl|monDom2|scaffold_90 (160773-160912) | |
| 14-123, gnl|oryCun1|scaffold_172466 (34401-34540) | |
| 14-123, gnl|panTro1|chr1 (19457381-19457520) | |
| 14-123, gnl|rheMac2|chr1 (21750521-21750660) | |
| 14-123, gnl|rn3|chr5 (158282012-158281873) | |
| 14-123, gnl|tetNig1|chr9 (1215165-1215280) | |
| 14-123, gnl|xenTro1|scaffold_1498 (131739-131613) | |
| 241-395, gnl|bosTau2|chr2 (61011208-61011054) | |
| 241-395, gnl|canFam2|chr2 (82411767-82411581) | |
| 241-395, gnl|danRer3|chr23 (23285510-23285696) | |
| 241-395, gnl|dasNov1|scaffold_1177 (104730-104916) | |
| 241-395, gnl|echTel1|scaffold_323227 (117634-117449) | |
| 241-395, gnl|fr1|chrUn (192781181-192780995) | |
| 241-395, gnl|galGal2|chr21 (4416091-4416277) | |
| 241-395, gnl|hg17|chr1 (19165766-19165952) | |
| 241-395, gnl|Hg17|chr1 (19165941-19165787) | |
| 241-395, gnl|loxAfr1|scaffold_31624 (7799-7614) | |
| 241-395, gnl|mm7|chr4 (138851088-138850902) | |
| 241-395, gnl|Mm7|chr4 (138850911-138851065) | |
| 241-395, gnl|monDom2|scaffold_90 (158680-158871) | |
| 241-395, gnl|oryCun1|scaffold_172466 (33007-33193) | |
| 241-395, gnl|panTro1|chr1 (19455788-19455974) | |
| 241-395, gnl|rheMac2|chr1 (21748945-21749131) | |
| 241-395, gnl|rn3|chr5 (158283297-158283111) | |
| 241-395, gnl|tetNig1|chr9 (1214658-1214844) | |
| 241-395, gnl|xenTro1|scaffold_1498 (132849-132660) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-123, gnl|bosTau2|chr2 (61012803-61012694) | |
| 14-123, gnl|canFam2|chr2 (82410252-82410113) | |
| 14-123, gnl|danRer3|chr23 (23286904-23287032) | |
| 14-123, gnl|echTel1|scaffold_323227 (116375-116240) | |
| 14-123, gnl|fr1|chrUn (192780661-192780546) | |
| 14-123, gnl|galGal2|chr21 (4417189-4417329) | |
| 14-123, gnl|hg17|chr1 (19167328-19167467) | |
| 14-123, gnl|Hg17|chr1 (19167453-19167344) | |
| 14-123, gnl|loxAfr1|scaffold_31624 (6353-6216) | |
| 14-123, gnl|mm7|chr4 (138849872-138849734) | |
| 14-123, gnl|Mm7|chr4 (138849745-138849854) | |
| 14-123, gnl|monDom2|scaffold_90 (160773-160912) | |
| 14-123, gnl|oryCun1|scaffold_172466 (34401-34540) | |
| 14-123, gnl|panTro1|chr1 (19457381-19457520) | |
| 14-123, gnl|rheMac2|chr1 (21750521-21750660) | |
| 14-123, gnl|rn3|chr5 (158282012-158281873) | |
| 14-123, gnl|tetNig1|chr9 (1215165-1215280) | |
| 14-123, gnl|xenTro1|scaffold_1498 (131739-131613) | |
| 241-395, gnl|bosTau2|chr2 (61011208-61011054) | |
| 241-395, gnl|canFam2|chr2 (82411767-82411581) | |
| 241-395, gnl|danRer3|chr23 (23285510-23285696) | |
| 241-395, gnl|dasNov1|scaffold_1177 (104730-104916) | |
| 241-395, gnl|echTel1|scaffold_323227 (117634-117449) | |
| 241-395, gnl|fr1|chrUn (192781181-192780995) | |
| 241-395, gnl|galGal2|chr21 (4416091-4416277) | |
| 241-395, gnl|hg17|chr1 (19165766-19165952) | |
| 241-395, gnl|Hg17|chr1 (19165941-19165787) | |
| 241-395, gnl|loxAfr1|scaffold_31624 (7799-7614) | |
| 241-395, gnl|mm7|chr4 (138851088-138850902) | |
| 241-395, gnl|Mm7|chr4 (138850911-138851065) | |
| 241-395, gnl|monDom2|scaffold_90 (158680-158871) | |
| 241-395, gnl|oryCun1|scaffold_172466 (33007-33193) | |
| 241-395, gnl|panTro1|chr1 (19455788-19455974) | |
| 241-395, gnl|rheMac2|chr1 (21748945-21749131) | |
| 241-395, gnl|rn3|chr5 (158283297-158283111) | |
| 241-395, gnl|tetNig1|chr9 (1214658-1214844) | |
| 241-395, gnl|xenTro1|scaffold_1498 (132849-132660) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |