Non-Coding RNA Search

rpigcb_1843.y1

Sequence:


               
               GGAGAAGGGAATAAAACACCCAGCCTGGGCCTTGCTGGTGCTGGGCTTGAATCCAGTGCT
TCCCCACATTTTCCCCTCCGTGGCAGGCTCATAAATGTCCACATACACTGTACTCAGCTA
CTAGCCAAAGAGAGGTTGTTCATCACACTGACCAAAGAACACTAGCACAGGGAAGGTGGA
GCGTGGGGTGGGAAATGTGAGGAATATAGCATCTGAAAAGACCACAGTTGGCTACAACAA
AAAATGGGGAGAAAGGAGAGAGATGCATACTCAGAACCTAGGACCCCAGGACTTCTGAGG
CTCTGCTGTGCCCACACCTCACAGATATGCTGAGCCAGGTCCCAACTTCATAGGATGGAG
AGAGGGATATGACTGTACGGAAAGGGAAGAGCAGCTACGGCTTCTGTCCACCTATCAGAG
ATCTTCCCAACTCAGGCTAGGAAACTGTTTCGACCGTTCAGTCTCAGTAACCAGACTCCA
CCGTCCAGATGGAGAGTCAAGTGCTGCAAAATTCTGGAAGGCAGGAGCTCTACCTGGGAG
GCTTGATGTACACTCCAGTCAGTACCAAGAAGAACATTTGCTAAAGGTGCTGGGACAGTA
ACAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAAGGGAATAAAACACCCAGCCTGGGCCTTGCTGGTGCTGGGCTTGAATCCAGTGCT
TCCCCACATTTTCCCCTCCGTGGCAGGCTCATAAATGTCCACATACACTGTACTCAGCTA
CTAGCCAAAGAGAGGTTGTTCATCACACTGACCAAAGAACACTAGCACAGGGAAGGTGGA
GCGTGGGGTGGGAAATGTGAGGAATATAGCATCTGAAAAGACCACAGTTGGCTACAACAA
AAAATGGGGAGAAAGGAGAGAGATGCATACTCAGAACCTAGGACCCCAGGACTTCTGAGG
CTCTGCTGTGCCCACACCTCACAGATATGCTGAGCCAGGTCCCAACTTCATAGGATGGAG
AGAGGGATATGACTGTACGGAAAGGGAAGAGCAGCTACGGCTTCTGTCCACCTATCAGAG
ATCTTCCCAACTCAGGCTAGGAAACTGTTTCGACCGTTCAGTCTCAGTAACCAGACTCCA
CCGTCCAGATGGAGAGTCAAGTGCTGCAAAATTCTGGAAGGCAGGAGCTCTACCTGGGAG
GCTTGATGTACACTCCAGTCAGTACCAAGAAGAACATTTGCTAAAGGTGCTGGGACAGTA
ACAAT

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

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               1-382, gnl|bosTau2|chr3 (9819511-9819130)
               

               
               1-382, gnl|Hg17|chr1 (153578820-153578468)
               

               
               1-382, gnl|Mm7|chr3 (87975299-87975648)
               


               
               409-605, gnl|bosTau2|chr3 (9819122-9818928)
               

               
               409-605, gnl|canFam2|chr7 (44174345-44174150)
               

               
               409-605, gnl|echTel1|scaffold_190277 (4948-4753)
               

               
               409-605, gnl|hg17|chr1 (153577738-153577942)
               

               
               409-605, gnl|Hg17|chr1 (153577941-153577760)
               

               
               409-605, gnl|loxAfr1|scaffold_73635 (13665-13481)
               

               
               409-605, gnl|mm7|chr3 (87975887-87975687)
               

               
               409-605, gnl|Mm7|chr3 (87975656-87975864)
               

               
               409-605, gnl|monDom2|scaffold_59 (523465-523241)
               

               
               409-605, gnl|panTro1|chr1 (135542451-135542655)
               

               
               409-605, gnl|rheMac2|chr1 (135405820-135406026)
               

               
               409-605, gnl|rn3|chr2 (179885536-179885323)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-382, gnl|bosTau2|chr3 (9819511-9819130)
               

               
               1-382, gnl|Hg17|chr1 (153578820-153578468)
               

               
               1-382, gnl|Mm7|chr3 (87975299-87975648)
               


               
               409-605, gnl|bosTau2|chr3 (9819122-9818928)
               

               
               409-605, gnl|canFam2|chr7 (44174345-44174150)
               

               
               409-605, gnl|echTel1|scaffold_190277 (4948-4753)
               

               
               409-605, gnl|hg17|chr1 (153577738-153577942)
               

               
               409-605, gnl|Hg17|chr1 (153577941-153577760)
               

               
               409-605, gnl|loxAfr1|scaffold_73635 (13665-13481)
               

               
               409-605, gnl|mm7|chr3 (87975887-87975687)
               

               
               409-605, gnl|Mm7|chr3 (87975656-87975864)
               

               
               409-605, gnl|monDom2|scaffold_59 (523465-523241)
               

               
               409-605, gnl|panTro1|chr1 (135542451-135542655)
               

               
               409-605, gnl|rheMac2|chr1 (135405820-135406026)
               

               
               409-605, gnl|rn3|chr2 (179885536-179885323)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-382, gnl\|bosTau2\|chr3 (9819511-9819130)
	1-382, gnl\|Hg17\|chr1 (153578820-153578468)
	1-382, gnl\|Mm7\|chr3 (87975299-87975648)

	409-605, gnl\|bosTau2\|chr3 (9819122-9818928)
	409-605, gnl\|canFam2\|chr7 (44174345-44174150)
	409-605, gnl\|echTel1\|scaffold_190277 (4948-4753)
	409-605, gnl\|hg17\|chr1 (153577738-153577942)
	409-605, gnl\|Hg17\|chr1 (153577941-153577760)
	409-605, gnl\|loxAfr1\|scaffold_73635 (13665-13481)
	409-605, gnl\|mm7\|chr3 (87975887-87975687)
	409-605, gnl\|Mm7\|chr3 (87975656-87975864)
	409-605, gnl\|monDom2\|scaffold_59 (523465-523241)
	409-605, gnl\|panTro1\|chr1 (135542451-135542655)
	409-605, gnl\|rheMac2\|chr1 (135405820-135406026)
	409-605, gnl\|rn3\|chr2 (179885536-179885323)