Non-Coding RNA Search

rpigcb_2015.y1

Sequence:


               
               TGAGCCCCGAGCAGGAGGAGACAGCCTCTCTGGTGTCCACGGGCACCCTGGTCCCTGAGG
GCATCTACCTGCCCCCTCCTGGGTACCAGCTCGTCCCAGACAACCAGTGGGAGCAGCTGC
AGATGGAGGGGCGGCAGCTGCAGAAGGACTTGGAGAGCATCAGCCGGGAGCGGGACGAGC
TGCAGGAGGGCCTGAGACGGAGCAACGAGGACTGCGCCAAGCAGATGCAGGTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAGCCCCGAGCAGGAGGAGACAGCCTCTCTGGTGTCCACGGGCACCCTGGTCCCTGAGG
GCATCTACCTGCCCCCTCCTGGGTACCAGCTCGTCCCAGACAACCAGTGGGAGCAGCTGC
AGATGGAGGGGCGGCAGCTGCAGAAGGACTTGGAGAGCATCAGCCGGGAGCGGGACGAGC
TGCAGGAGGGCCTGAGACGGAGCAACGAGGACTGCGCCAAGCAGATGCAGGTGCT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-129, - strand, RNAz p=0.716504
               

               
               20-129, - strand, RNAz p=0.690844

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-129, - strand, RNAz p=0.716504
               

               
               20-129, - strand, RNAz p=0.690844

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               12-119, - strand, RNAmicro p=0.999114
               

               
               24-114, + strand, RNAmicro p=0.99557

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               12-119, - strand, RNAmicro p=0.999114
               

               
               24-114, + strand, RNAmicro p=0.99557

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-129, gnl|bosTau2|chr25 (24872202-24872330)
               

               
               1-129, gnl|canFam2|chr6 (21416754-21416915)
               

               
               1-129, gnl|danRer3|chr3 (18391358-18391496)
               

               
               1-129, gnl|dasNov1|scaffold_49218 (11081-10948)
               

               
               1-129, gnl|echTel1|scaffold_142821 (256-409)
               

               
               1-129, gnl|fr1|chrUn (94529079-94529218)
               

               
               1-129, gnl|hg17|chr16 (28833040-28833201)
               

               
               1-129, gnl|Hg17|chr16 (28833185-28833057)
               

               
               1-129, gnl|loxAfr1|scaffold_89148 (4613-4774)
               

               
               1-129, gnl|mm7|chr7 (122535484-122535323)
               

               
               1-129, gnl|Mm7|chr7 (122535337-122535465)
               

               
               1-129, gnl|monDom2|scaffold_5 (119370385-119370217)
               

               
               1-129, gnl|oryCun1|scaffold_186528 (13775-13920)
               

               
               1-129, gnl|panTro1|chr18_random (15521384-15521223)
               

               
               1-129, gnl|rheMac2|chr20 (26932114-26931953)
               

               
               1-129, gnl|rn3|chr1 (185696054-185695893)
               

               
               1-129, gnl|tetNig1|chrUn_random (39444606-39444467)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-129, gnl|bosTau2|chr25 (24872202-24872330)
               

               
               1-129, gnl|canFam2|chr6 (21416754-21416915)
               

               
               1-129, gnl|danRer3|chr3 (18391358-18391496)
               

               
               1-129, gnl|dasNov1|scaffold_49218 (11081-10948)
               

               
               1-129, gnl|echTel1|scaffold_142821 (256-409)
               

               
               1-129, gnl|fr1|chrUn (94529079-94529218)
               

               
               1-129, gnl|hg17|chr16 (28833040-28833201)
               

               
               1-129, gnl|Hg17|chr16 (28833185-28833057)
               

               
               1-129, gnl|loxAfr1|scaffold_89148 (4613-4774)
               

               
               1-129, gnl|mm7|chr7 (122535484-122535323)
               

               
               1-129, gnl|Mm7|chr7 (122535337-122535465)
               

               
               1-129, gnl|monDom2|scaffold_5 (119370385-119370217)
               

               
               1-129, gnl|oryCun1|scaffold_186528 (13775-13920)
               

               
               1-129, gnl|panTro1|chr18_random (15521384-15521223)
               

               
               1-129, gnl|rheMac2|chr20 (26932114-26931953)
               

               
               1-129, gnl|rn3|chr1 (185696054-185695893)
               

               
               1-129, gnl|tetNig1|chrUn_random (39444606-39444467)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-129, - strand, RNAz p=0.716504
	20-129, - strand, RNAz p=0.690844

	12-119, - strand, RNAmicro p=0.999114
	24-114, + strand, RNAmicro p=0.99557

	1-129, gnl\|bosTau2\|chr25 (24872202-24872330)
	1-129, gnl\|canFam2\|chr6 (21416754-21416915)
	1-129, gnl\|danRer3\|chr3 (18391358-18391496)
	1-129, gnl\|dasNov1\|scaffold_49218 (11081-10948)
	1-129, gnl\|echTel1\|scaffold_142821 (256-409)
	1-129, gnl\|fr1\|chrUn (94529079-94529218)
	1-129, gnl\|hg17\|chr16 (28833040-28833201)
	1-129, gnl\|Hg17\|chr16 (28833185-28833057)
	1-129, gnl\|loxAfr1\|scaffold_89148 (4613-4774)
	1-129, gnl\|mm7\|chr7 (122535484-122535323)
	1-129, gnl\|Mm7\|chr7 (122535337-122535465)
	1-129, gnl\|monDom2\|scaffold_5 (119370385-119370217)
	1-129, gnl\|oryCun1\|scaffold_186528 (13775-13920)
	1-129, gnl\|panTro1\|chr18_random (15521384-15521223)
	1-129, gnl\|rheMac2\|chr20 (26932114-26931953)
	1-129, gnl\|rn3\|chr1 (185696054-185695893)
	1-129, gnl\|tetNig1\|chrUn_random (39444606-39444467)