Non-Coding RNA Search

rpigcb_2255.y1

Sequence:


               
               TGTCTCCAGTATGATGAACGTGTCATTGTGACTGGCTCTTCAGACTCTACAGTGAGAGTC
TGGGATGTGAACACGGGCGAAGTTCTGAACACGTTGATCCACCACAACGAGGCTGTACTG
CACCTACGCTTCAGCAATGGACTGATGGTGACCTGTTCTAAGGACCGCTCCATCGCAGTG
TGGGACATGGCTTCTGCCACTGATATCACTTTACGCCGTGTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTCCAGTATGATGAACGTGTCATTGTGACTGGCTCTTCAGACTCTACAGTGAGAGTC
TGGGATGTGAACACGGGCGAAGTTCTGAACACGTTGATCCACCACAACGAGGCTGTACTG
CACCTACGCTTCAGCAATGGACTGATGGTGACCTGTTCTAAGGACCGCTCCATCGCAGTG
TGGGACATGGCTTCTGCCACTGATATCACTTTACGCCGTGTCCTG

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               35-224, gnl|bosTau2|chr20 (2056464-2056651)
               

               
               35-224, gnl|canFam2|chr4 (43541796-43541626)
               

               
               35-224, gnl|danRer3|chr23 (53327147-53326977)
               

               
               35-224, gnl|dasNov1|scaffold_3316 (60186-60016)
               

               
               35-224, gnl|echTel1|scaffold_317612 (82725-82555)
               

               
               35-224, gnl|fr1|chrUn (109360741-109360571)
               

               
               35-224, gnl|galGal2|chr13 (6665320-6665490)
               

               
               35-224, gnl|hg17|chr21 (31921826-31921996)
               

               
               35-224, gnl|Hg17|chr5 (171236163-171235976)
               

               
               35-224, gnl|loxAfr1|scaffold_7067 (44432-44262)
               

               
               35-224, gnl|mm7|chr11 (32687350-32687180)
               

               
               35-224, gnl|Mm7|chr11 (32687128-32687315)
               

               
               35-224, gnl|monDom2|scaffold_6 (28969439-28969269)
               

               
               35-224, gnl|oryCun1|scaffold_196578 (87297-87127)
               

               
               35-224, gnl|panTro1|chr22 (31893685-31893855)
               

               
               35-224, gnl|rheMac2|chr3 (14881093-14880922)
               

               
               35-224, gnl|tetNig1|chr1 (137541-137711)
               

               
               35-224, gnl|xenTro1|scaffold_475 (351894-352064)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               35-224, gnl|bosTau2|chr20 (2056464-2056651)
               

               
               35-224, gnl|canFam2|chr4 (43541796-43541626)
               

               
               35-224, gnl|danRer3|chr23 (53327147-53326977)
               

               
               35-224, gnl|dasNov1|scaffold_3316 (60186-60016)
               

               
               35-224, gnl|echTel1|scaffold_317612 (82725-82555)
               

               
               35-224, gnl|fr1|chrUn (109360741-109360571)
               

               
               35-224, gnl|galGal2|chr13 (6665320-6665490)
               

               
               35-224, gnl|hg17|chr21 (31921826-31921996)
               

               
               35-224, gnl|Hg17|chr5 (171236163-171235976)
               

               
               35-224, gnl|loxAfr1|scaffold_7067 (44432-44262)
               

               
               35-224, gnl|mm7|chr11 (32687350-32687180)
               

               
               35-224, gnl|Mm7|chr11 (32687128-32687315)
               

               
               35-224, gnl|monDom2|scaffold_6 (28969439-28969269)
               

               
               35-224, gnl|oryCun1|scaffold_196578 (87297-87127)
               

               
               35-224, gnl|panTro1|chr22 (31893685-31893855)
               

               
               35-224, gnl|rheMac2|chr3 (14881093-14880922)
               

               
               35-224, gnl|tetNig1|chr1 (137541-137711)
               

               
               35-224, gnl|xenTro1|scaffold_475 (351894-352064)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	35-224, gnl\|bosTau2\|chr20 (2056464-2056651)
	35-224, gnl\|canFam2\|chr4 (43541796-43541626)
	35-224, gnl\|danRer3\|chr23 (53327147-53326977)
	35-224, gnl\|dasNov1\|scaffold_3316 (60186-60016)
	35-224, gnl\|echTel1\|scaffold_317612 (82725-82555)
	35-224, gnl\|fr1\|chrUn (109360741-109360571)
	35-224, gnl\|galGal2\|chr13 (6665320-6665490)
	35-224, gnl\|hg17\|chr21 (31921826-31921996)
	35-224, gnl\|Hg17\|chr5 (171236163-171235976)
	35-224, gnl\|loxAfr1\|scaffold_7067 (44432-44262)
	35-224, gnl\|mm7\|chr11 (32687350-32687180)
	35-224, gnl\|Mm7\|chr11 (32687128-32687315)
	35-224, gnl\|monDom2\|scaffold_6 (28969439-28969269)
	35-224, gnl\|oryCun1\|scaffold_196578 (87297-87127)
	35-224, gnl\|panTro1\|chr22 (31893685-31893855)
	35-224, gnl\|rheMac2\|chr3 (14881093-14880922)
	35-224, gnl\|tetNig1\|chr1 (137541-137711)
	35-224, gnl\|xenTro1\|scaffold_475 (351894-352064)