Non-Coding RNA Search

rpigcb_2307.y1

Sequence:


               
               AACCCCATCCTTCCACCCATCATCCCCTTCCCCCTCACCCTAAAGCATTCCAGCAGCCAA
GGGTCTGGGACCCAAACCATGCTCCCTCCCTCCCAACTCTACCCCCAAAGGGCCCCCATC
TCTGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCCCATCCTTCCACCCATCATCCCCTTCCCCCTCACCCTAAAGCATTCCAGCAGCCAA
GGGTCTGGGACCCAAACCATGCTCCCTCCCTCCCAACTCTACCCCCAAAGGGCCCCCATC
TCTGGGGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               14-128, - strand, RNAz p=0.978976
               

               
               37-126, - strand, RNAz p=0.713967

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-128, - strand, RNAz p=0.978976
               

               
               37-126, - strand, RNAz p=0.713967

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-128, gnl|bosTau2|chr18 (28352392-28352518)
               

               
               1-128, gnl|canFam2|chr5 (85206623-85206345)
               

               
               1-128, gnl|dasNov1|scaffold_32756 (5593-5345)
               

               
               1-128, gnl|echTel1|scaffold_310500 (93343-93519)
               

               
               1-128, gnl|hg17|chr16 (65758209-65758497)
               

               
               1-128, gnl|Hg17|chr16 (65758237-65758362)
               

               
               1-128, gnl|loxAfr1|scaffold_99347 (602-883)
               

               
               1-128, gnl|mm7|chr8 (103870453-103870734)
               

               
               1-128, gnl|Mm7|chr8 (103870432-103870582)
               

               
               1-128, gnl|monDom2|scaffold_23 (19765143-19764775)
               

               
               1-128, gnl|panTro1|chr18 (60018003-60018291)
               

               
               1-128, gnl|rheMac2|chr20 (65466639-65466930)
               

               
               1-128, gnl|rn3|chr19 (35092406-35092678)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-128, gnl|bosTau2|chr18 (28352392-28352518)
               

               
               1-128, gnl|canFam2|chr5 (85206623-85206345)
               

               
               1-128, gnl|dasNov1|scaffold_32756 (5593-5345)
               

               
               1-128, gnl|echTel1|scaffold_310500 (93343-93519)
               

               
               1-128, gnl|hg17|chr16 (65758209-65758497)
               

               
               1-128, gnl|Hg17|chr16 (65758237-65758362)
               

               
               1-128, gnl|loxAfr1|scaffold_99347 (602-883)
               

               
               1-128, gnl|mm7|chr8 (103870453-103870734)
               

               
               1-128, gnl|Mm7|chr8 (103870432-103870582)
               

               
               1-128, gnl|monDom2|scaffold_23 (19765143-19764775)
               

               
               1-128, gnl|panTro1|chr18 (60018003-60018291)
               

               
               1-128, gnl|rheMac2|chr20 (65466639-65466930)
               

               
               1-128, gnl|rn3|chr19 (35092406-35092678)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	14-128, - strand, RNAz p=0.978976
	37-126, - strand, RNAz p=0.713967

	1-128, gnl\|bosTau2\|chr18 (28352392-28352518)
	1-128, gnl\|canFam2\|chr5 (85206623-85206345)
	1-128, gnl\|dasNov1\|scaffold_32756 (5593-5345)
	1-128, gnl\|echTel1\|scaffold_310500 (93343-93519)
	1-128, gnl\|hg17\|chr16 (65758209-65758497)
	1-128, gnl\|Hg17\|chr16 (65758237-65758362)
	1-128, gnl\|loxAfr1\|scaffold_99347 (602-883)
	1-128, gnl\|mm7\|chr8 (103870453-103870734)
	1-128, gnl\|Mm7\|chr8 (103870432-103870582)
	1-128, gnl\|monDom2\|scaffold_23 (19765143-19764775)
	1-128, gnl\|panTro1\|chr18 (60018003-60018291)
	1-128, gnl\|rheMac2\|chr20 (65466639-65466930)
	1-128, gnl\|rn3\|chr19 (35092406-35092678)