Non-Coding RNA Search

rpigcb_2341.y1

Sequence:


               
               AGTGAACTTGAGCTGAGTTTGCAGCTCTGGAGAGATTGAGGAGCAGGCTTTTCTCGGGTC
ACTTTGGAAGGAGAGGATTGTGAGGCCGCCCCTTTAAATAGCATTCCCGTGGGAGGTAGA
TCACATCCAGCCGTCACCTGCTGCCAAAGCATCATTTTTGGTCTCTATCAAACTCAAAGC
TTGTCGGAAGGGATTGCGGGGTTAGGGAATTGAGGAGGCATGGTCTCCAAAGAGCAGGGG
CAGTTTGGAAGCTGAAAAGGAGAAGGATGAGGTTGAGCAGAAGCCTGGGAATGCTGCCAG
TGGGGGACAAGGGGGAAAGATGGAGTGAAGAGCAGTGGTCTTTTGAGCCTATGAATGGAG
CAGTCATACCCTATTCTTATCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGAACTTGAGCTGAGTTTGCAGCTCTGGAGAGATTGAGGAGCAGGCTTTTCTCGGGTC
ACTTTGGAAGGAGAGGATTGTGAGGCCGCCCCTTTAAATAGCATTCCCGTGGGAGGTAGA
TCACATCCAGCCGTCACCTGCTGCCAAAGCATCATTTTTGGTCTCTATCAAACTCAAAGC
TTGTCGGAAGGGATTGCGGGGTTAGGGAATTGAGGAGGCATGGTCTCCAAAGAGCAGGGG
CAGTTTGGAAGCTGAAAAGGAGAAGGATGAGGTTGAGCAGAAGCCTGGGAATGCTGCCAG
TGGGGGACAAGGGGGAAAGATGGAGTGAAGAGCAGTGGTCTTTTGAGCCTATGAATGGAG
CAGTCATACCCTATTCTTATCTCT

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-384, gnl|bosTau2|chr5 (16260011-16259619)
               

               
               1-384, gnl|canFam2|chr27 (3803001-3802577)
               

               
               1-384, gnl|dasNov1|scaffold_12709 (19604-19192)
               

               
               1-384, gnl|echTel1|scaffold_299318 (8856-9260)
               

               
               1-384, gnl|hg17|chr12 (53226737-53227154)
               

               
               1-384, gnl|Hg17|chr12 (53226859-53227236)
               

               
               1-384, gnl|loxAfr1|scaffold_5595 (59345-59776)
               

               
               1-384, gnl|mm7|chr15 (103489561-103489996)
               

               
               1-384, gnl|Mm7|chr15 (103489683-103490093)
               

               
               1-384, gnl|monDom2|scaffold_355 (128112-128592)
               

               
               1-384, gnl|oryCun1|scaffold_213447 (6208-5788)
               

               
               1-384, gnl|panTro1|chr10 (54493892-54494309)
               

               
               1-384, gnl|rheMac2|chr11 (51663984-51664401)
               

               
               1-384, gnl|rn3|chr7 (142479144-142479582)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-384, gnl|bosTau2|chr5 (16260011-16259619)
               

               
               1-384, gnl|canFam2|chr27 (3803001-3802577)
               

               
               1-384, gnl|dasNov1|scaffold_12709 (19604-19192)
               

               
               1-384, gnl|echTel1|scaffold_299318 (8856-9260)
               

               
               1-384, gnl|hg17|chr12 (53226737-53227154)
               

               
               1-384, gnl|Hg17|chr12 (53226859-53227236)
               

               
               1-384, gnl|loxAfr1|scaffold_5595 (59345-59776)
               

               
               1-384, gnl|mm7|chr15 (103489561-103489996)
               

               
               1-384, gnl|Mm7|chr15 (103489683-103490093)
               

               
               1-384, gnl|monDom2|scaffold_355 (128112-128592)
               

               
               1-384, gnl|oryCun1|scaffold_213447 (6208-5788)
               

               
               1-384, gnl|panTro1|chr10 (54493892-54494309)
               

               
               1-384, gnl|rheMac2|chr11 (51663984-51664401)
               

               
               1-384, gnl|rn3|chr7 (142479144-142479582)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-384, gnl\|bosTau2\|chr5 (16260011-16259619)
	1-384, gnl\|canFam2\|chr27 (3803001-3802577)
	1-384, gnl\|dasNov1\|scaffold_12709 (19604-19192)
	1-384, gnl\|echTel1\|scaffold_299318 (8856-9260)
	1-384, gnl\|hg17\|chr12 (53226737-53227154)
	1-384, gnl\|Hg17\|chr12 (53226859-53227236)
	1-384, gnl\|loxAfr1\|scaffold_5595 (59345-59776)
	1-384, gnl\|mm7\|chr15 (103489561-103489996)
	1-384, gnl\|Mm7\|chr15 (103489683-103490093)
	1-384, gnl\|monDom2\|scaffold_355 (128112-128592)
	1-384, gnl\|oryCun1\|scaffold_213447 (6208-5788)
	1-384, gnl\|panTro1\|chr10 (54493892-54494309)
	1-384, gnl\|rheMac2\|chr11 (51663984-51664401)
	1-384, gnl\|rn3\|chr7 (142479144-142479582)