Non-Coding RNA Search

rpigcb_2643.y1

Sequence:


               
               CCCGGGCCGGGGGAATTCCCAGCCCGGGCCCCTTCGCCTCCGGAATTCCCAGCCAAGGAC
TCCGGGCCGGGGGAATGACTAAGGAAGGACCTATGGGACCTCGTCTGATGCAGAATGGTT
TTGGGGGCCCTGAGCCATCCCTCCCAGGAACCCCTCACTCTCCAGCTCCTCCTCCCAGTG
GGGGTACCTGCAAAGAAGAATCCCTGGAAGGCAAAGCTCCCCTGGATCTCTTTGCTCATT
TTGGGCCCGAGCCAGGAGAACACCCTGATCCCCTGCCTCCCTCTGCACCCTCCCCGCCTC
GGGAAGGGGCCATGACCCCACCTCCTTTCCCTTCTCCCTTTGAGCTGGCACGGGAGAATG
GCCCAGCCCTGCTGCCTCCCACTTCTCCACCCCTGGGGGCCTTGAAGCAGGAGAGCTGCA
GCAGCCCTCTTCGTCCCCAGAGCCTAGCCCGGCCAGGCTCAGGCTCTAGCCCTGAGGCCG
CAGGCGTCCCTGCCAGCGCCTCACCTTCCCGGGTTGCTGGGGTGCCCTTCTTCAAGCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGGGCCGGGGGAATTCCCAGCCCGGGCCCCTTCGCCTCCGGAATTCCCAGCCAAGGAC
TCCGGGCCGGGGGAATGACTAAGGAAGGACCTATGGGACCTCGTCTGATGCAGAATGGTT
TTGGGGGCCCTGAGCCATCCCTCCCAGGAACCCCTCACTCTCCAGCTCCTCCTCCCAGTG
GGGGTACCTGCAAAGAAGAATCCCTGGAAGGCAAAGCTCCCCTGGATCTCTTTGCTCATT
TTGGGCCCGAGCCAGGAGAACACCCTGATCCCCTGCCTCCCTCTGCACCCTCCCCGCCTC
GGGAAGGGGCCATGACCCCACCTCCTTTCCCTTCTCCCTTTGAGCTGGCACGGGAGAATG
GCCCAGCCCTGCTGCCTCCCACTTCTCCACCCCTGGGGGCCTTGAAGCAGGAGAGCTGCA
GCAGCCCTCTTCGTCCCCAGAGCCTAGCCCGGCCAGGCTCAGGCTCTAGCCCTGAGGCCG
CAGGCGTCCCTGCCAGCGCCTCACCTTCCCGGGTTGCTGGGGTGCCCTTCTTCAAGCAGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               134-490, - strand, RNAz p=0.999593

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               134-490, - strand, RNAz p=0.999593

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               120-235, - strand, RNAmicro p=0.999989
               

               
               355-538, - strand, RNAmicro p=0.999876

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               120-235, - strand, RNAmicro p=0.999989
               

               
               355-538, - strand, RNAmicro p=0.999876

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               138-422, DA806818 OCBBF3 Homo sapiens cDNA clone OCBBF3022295 5', mRNA 
(dbj|DA806818.1|), blast E-value=0, identity=84.03% 
               

               
               138-422, AL519336 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL519336.3|), blast E-value=1.4013e-45, identity=83.39% 
               

               
               138-479, AGENCOURT_6542436 NIH_MGC_119 Homo sapiens cDNA clone IMAGE 
(gb|BM553347.1|), blast E-value=0, identity=82.9% 
               

               
               169-479, UI-E-EJ0-ain-g-10-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM718164.1|), blast E-value=0, identity=83.12% 
               

               
               138-422, AGENCOURT_7566242 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ217249.1|), blast E-value=0, identity=84.03% 
               

               
               169-376, LIB30320_010_G05_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268545.1|), blast E-value=0, identity=88.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               138-422, DA806818 OCBBF3 Homo sapiens cDNA clone OCBBF3022295 5', mRNA 
(dbj|DA806818.1|), blast E-value=0, identity=84.03% 
               

               
               138-422, AL519336 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens 
(emb|AL519336.3|), blast E-value=1.4013e-45, identity=83.39% 
               

               
               138-479, AGENCOURT_6542436 NIH_MGC_119 Homo sapiens cDNA clone IMAGE 
(gb|BM553347.1|), blast E-value=0, identity=82.9% 
               

               
               169-479, UI-E-EJ0-ain-g-10-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone 
(gb|BM718164.1|), blast E-value=0, identity=83.12% 
               

               
               138-422, AGENCOURT_7566242 NIH_MGC_92 Homo sapiens cDNA clone IMAGE 
(gb|BQ217249.1|), blast E-value=0, identity=84.03% 
               

               
               169-376, LIB30320_010_G05_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN268545.1|), blast E-value=0, identity=88.94%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-540, gnl|bosTau2|chr3 (16264562-16264080)
               

               
               55-540, gnl|Hg17|chr1 (148072154-148072636)
               

               
               55-540, gnl|Mm7|chr3 (94886089-94885613)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-540, gnl|bosTau2|chr3 (16264562-16264080)
               

               
               55-540, gnl|Hg17|chr1 (148072154-148072636)
               

               
               55-540, gnl|Mm7|chr3 (94886089-94885613)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	120-235, - strand, RNAmicro p=0.999989
	355-538, - strand, RNAmicro p=0.999876

	138-422, DA806818 OCBBF3 Homo sapiens cDNA clone OCBBF3022295 5', mRNA (dbj\|DA806818.1\|), blast E-value=0, identity=84.03%
	138-422, AL519336 Homo sapiens NEUROBLASTOMA COT 10-NORMALIZED Homo sapiens (emb\|AL519336.3\|), blast E-value=1.4013e-45, identity=83.39%
	138-479, AGENCOURT_6542436 NIH_MGC_119 Homo sapiens cDNA clone IMAGE (gb\|BM553347.1\|), blast E-value=0, identity=82.9%
	169-479, UI-E-EJ0-ain-g-10-0-UI.r1 UI-E-EJ0 Homo sapiens cDNA clone (gb\|BM718164.1\|), blast E-value=0, identity=83.12%
	138-422, AGENCOURT_7566242 NIH_MGC_92 Homo sapiens cDNA clone IMAGE (gb\|BQ217249.1\|), blast E-value=0, identity=84.03%
	169-376, LIB30320_010_G05_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN268545.1\|), blast E-value=0, identity=88.94%

	55-540, gnl\|bosTau2\|chr3 (16264562-16264080)
	55-540, gnl\|Hg17\|chr1 (148072154-148072636)
	55-540, gnl\|Mm7\|chr3 (94886089-94885613)