Non-Coding RNA Search

rpigcb_2665.y1

Sequence:


               
               CATCACTTAGTAGTAATTGCTGGTTTCAAGGTTTCAGAATGGGAATTTGCCCCGTATGAT
TTTGAAAACCAGACCTTTACCCTGAATTCAGAGCATGAGGCAGCCTTCATGCCAGCAAAT
CTGCCTGGAAACAGACTGCCTCTAGGTCTCTAGAGGTCAGAATTGACTCCAGAAAAGTCA
GATGGACTTTTGAAGGAAAGGTCACTATGGGAAAGCTGTTTAAGGAGGTTCCCTAGGAGA
GACTTAGATTCAAATGACCCCAATGCTCCTGATGGGTCTCAATTTCCTACTTAATTTACC
CAGTTAATCCAGATTCTGTTCAGGAGCTCAAAGACCTTAATCAGGATACATTTCATCCAG
ATATTTTGAGATAATGGAAAATGTTAGACTGGCACTTGTGACACTCCTAAAATGAGGGAT
TCTCAGATTGTGAAATCCTGACCAGCTATCTTATCTGAAGTGTTACTAAACTTACTTAGA
AAAAAGAGTAATAGGTAAAAACATCATAGAATGATGGTAGCAAGAAGAGACTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCACTTAGTAGTAATTGCTGGTTTCAAGGTTTCAGAATGGGAATTTGCCCCGTATGAT
TTTGAAAACCAGACCTTTACCCTGAATTCAGAGCATGAGGCAGCCTTCATGCCAGCAAAT
CTGCCTGGAAACAGACTGCCTCTAGGTCTCTAGAGGTCAGAATTGACTCCAGAAAAGTCA
GATGGACTTTTGAAGGAAAGGTCACTATGGGAAAGCTGTTTAAGGAGGTTCCCTAGGAGA
GACTTAGATTCAAATGACCCCAATGCTCCTGATGGGTCTCAATTTCCTACTTAATTTACC
CAGTTAATCCAGATTCTGTTCAGGAGCTCAAAGACCTTAATCAGGATACATTTCATCCAG
ATATTTTGAGATAATGGAAAATGTTAGACTGGCACTTGTGACACTCCTAAAATGAGGGAT
TCTCAGATTGTGAAATCCTGACCAGCTATCTTATCTGAAGTGTTACTAAACTTACTTAGA
AAAAAGAGTAATAGGTAAAAACATCATAGAATGATGGTAGCAAGAAGAGACTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               45-163, - strand, RNAz p=0.94859
               

               
               56-163, - strand, RNAz p=0.984142

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               45-163, - strand, RNAz p=0.94859
               

               
               56-163, - strand, RNAz p=0.984142

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               11-163, gnl|bosTau2|chr12 (10821668-10821820)
               

               
               11-163, gnl|canFam2|chr22 (3402325-3402073)
               

               
               11-163, gnl|dasNov1|scaffold_61831 (2321-2108)
               

               
               11-163, gnl|echTel1|scaffold_293108 (12649-12857)
               

               
               11-163, gnl|hg17|chr13 (51061881-51062134)
               

               
               11-163, gnl|Hg17|chr13 (51061965-51062117)
               

               
               11-163, gnl|mm7|chr14 (57706632-57706884)
               

               
               11-163, gnl|Mm7|chr14 (57706740-57706869)
               

               
               11-163, gnl|oryCun1|scaffold_206413 (85500-85753)
               

               
               11-163, gnl|panTro1|chr14_random (17215139-17215392)
               

               
               11-163, gnl|rheMac2|chr17 (30406392-30406645)
               

               
               11-163, gnl|rn3|chr15 (42117726-42117976)
               


               
               198-533, gnl|bosTau2|chr12 (10823404-10823750)
               

               
               198-533, gnl|Hg17|chr13 (51062138-51062468)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-163, gnl|bosTau2|chr12 (10821668-10821820)
               

               
               11-163, gnl|canFam2|chr22 (3402325-3402073)
               

               
               11-163, gnl|dasNov1|scaffold_61831 (2321-2108)
               

               
               11-163, gnl|echTel1|scaffold_293108 (12649-12857)
               

               
               11-163, gnl|hg17|chr13 (51061881-51062134)
               

               
               11-163, gnl|Hg17|chr13 (51061965-51062117)
               

               
               11-163, gnl|mm7|chr14 (57706632-57706884)
               

               
               11-163, gnl|Mm7|chr14 (57706740-57706869)
               

               
               11-163, gnl|oryCun1|scaffold_206413 (85500-85753)
               

               
               11-163, gnl|panTro1|chr14_random (17215139-17215392)
               

               
               11-163, gnl|rheMac2|chr17 (30406392-30406645)
               

               
               11-163, gnl|rn3|chr15 (42117726-42117976)
               


               
               198-533, gnl|bosTau2|chr12 (10823404-10823750)
               

               
               198-533, gnl|Hg17|chr13 (51062138-51062468)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	45-163, - strand, RNAz p=0.94859
	56-163, - strand, RNAz p=0.984142

	11-163, gnl\|bosTau2\|chr12 (10821668-10821820)
	11-163, gnl\|canFam2\|chr22 (3402325-3402073)
	11-163, gnl\|dasNov1\|scaffold_61831 (2321-2108)
	11-163, gnl\|echTel1\|scaffold_293108 (12649-12857)
	11-163, gnl\|hg17\|chr13 (51061881-51062134)
	11-163, gnl\|Hg17\|chr13 (51061965-51062117)
	11-163, gnl\|mm7\|chr14 (57706632-57706884)
	11-163, gnl\|Mm7\|chr14 (57706740-57706869)
	11-163, gnl\|oryCun1\|scaffold_206413 (85500-85753)
	11-163, gnl\|panTro1\|chr14_random (17215139-17215392)
	11-163, gnl\|rheMac2\|chr17 (30406392-30406645)
	11-163, gnl\|rn3\|chr15 (42117726-42117976)

	198-533, gnl\|bosTau2\|chr12 (10823404-10823750)
	198-533, gnl\|Hg17\|chr13 (51062138-51062468)