Non-Coding RNA Search

rpigcb_2710.y1

Sequence:


               
               TAAACCTTTCACTGCATGCCAGGAGGTCCCATTCTCCCGCGTGTGGTGCAGTAACCGGCA
GCCCCTGCACTGTGCCTTCTCCCTGGAGCGATACACGCCCACCACCACCCAGCTGTCCTG
CAAAATCTGCATCCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCAAT
CCTAGAGAGTGAAAGAGAAACCATCACTTTCTTTGCACAAGAGGACAGCACCTATCCCGC
ACAGACTGGCCCCAAAGCCTTCAAAATTCCCTACTCCATCAGACAGCGGATTTGTGCTAC
ATTTGATACCCCCAATGCCAAAGGCAAGGACTGGCAGATGTTAGCACAGAAAAACAGCAT
CAACAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAACCTTTCACTGCATGCCAGGAGGTCCCATTCTCCCGCGTGTGGTGCAGTAACCGGCA
GCCCCTGCACTGTGCCTTCTCCCTGGAGCGATACACGCCCACCACCACCCAGCTGTCCTG
CAAAATCTGCATCCGGCAGCTCAAAGGCCATGAACAGATCCTCCAAGTGCAGACATCAAT
CCTAGAGAGTGAAAGAGAAACCATCACTTTCTTTGCACAAGAGGACAGCACCTATCCCGC
ACAGACTGGCCCCAAAGCCTTCAAAATTCCCTACTCCATCAGACAGCGGATTTGTGCTAC
ATTTGATACCCCCAATGCCAAAGGCAAGGACTGGCAGATGTTAGCACAGAAAAACAGCAT
CAACAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               59-178, - strand, RNAz p=0.98787
               

               
               62-180, - strand, RNAz p=0.997515

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-178, - strand, RNAz p=0.98787
               

               
               62-180, - strand, RNAz p=0.997515

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               20-192, gnl|bosTau2|chr27 (20672418-20672589)
               

               
               20-192, gnl|canFam2|chr16 (32183279-32183145)
               

               
               20-192, gnl|danRer3|chr5 (21038523-21038397)
               

               
               20-192, gnl|dasNov1|scaffold_36239 (39491-39626)
               

               
               20-192, gnl|echTel1|scaffold_306390 (5167-5295)
               

               
               20-192, gnl|fr1|chrUn (80286559-80286430)
               

               
               20-192, gnl|galGal2|chrUn (8782679-8782558)
               

               
               20-192, gnl|hg17|chr8 (35743943-35744071)
               

               
               20-192, gnl|Hg17|chr8 (35743959-35744130)
               

               
               20-192, gnl|loxAfr1|scaffold_728 (141235-141356)
               

               
               20-192, gnl|mm7|chr8 (27426860-27426723)
               

               
               20-192, gnl|Mm7|chr8 (27426833-27426662)
               

               
               20-192, gnl|monDom2|scaffold_1 (88052427-88052292)
               

               
               20-192, gnl|oryCun1|scaffold_180359 (15021-15156)
               

               
               20-192, gnl|panTro1|chr7 (36955515-36955643)
               

               
               20-192, gnl|rheMac2|chr8 (36136418-36136546)
               

               
               20-192, gnl|rn3|chr16 (67643664-67643802)
               

               
               20-192, gnl|tetNig1|chrUn_random (2025680-2025551)
               

               
               20-192, gnl|xenTro1|scaffold_5 (2741878-2741765)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-192, gnl|bosTau2|chr27 (20672418-20672589)
               

               
               20-192, gnl|canFam2|chr16 (32183279-32183145)
               

               
               20-192, gnl|danRer3|chr5 (21038523-21038397)
               

               
               20-192, gnl|dasNov1|scaffold_36239 (39491-39626)
               

               
               20-192, gnl|echTel1|scaffold_306390 (5167-5295)
               

               
               20-192, gnl|fr1|chrUn (80286559-80286430)
               

               
               20-192, gnl|galGal2|chrUn (8782679-8782558)
               

               
               20-192, gnl|hg17|chr8 (35743943-35744071)
               

               
               20-192, gnl|Hg17|chr8 (35743959-35744130)
               

               
               20-192, gnl|loxAfr1|scaffold_728 (141235-141356)
               

               
               20-192, gnl|mm7|chr8 (27426860-27426723)
               

               
               20-192, gnl|Mm7|chr8 (27426833-27426662)
               

               
               20-192, gnl|monDom2|scaffold_1 (88052427-88052292)
               

               
               20-192, gnl|oryCun1|scaffold_180359 (15021-15156)
               

               
               20-192, gnl|panTro1|chr7 (36955515-36955643)
               

               
               20-192, gnl|rheMac2|chr8 (36136418-36136546)
               

               
               20-192, gnl|rn3|chr16 (67643664-67643802)
               

               
               20-192, gnl|tetNig1|chrUn_random (2025680-2025551)
               

               
               20-192, gnl|xenTro1|scaffold_5 (2741878-2741765)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	59-178, - strand, RNAz p=0.98787
	62-180, - strand, RNAz p=0.997515

	20-192, gnl\|bosTau2\|chr27 (20672418-20672589)
	20-192, gnl\|canFam2\|chr16 (32183279-32183145)
	20-192, gnl\|danRer3\|chr5 (21038523-21038397)
	20-192, gnl\|dasNov1\|scaffold_36239 (39491-39626)
	20-192, gnl\|echTel1\|scaffold_306390 (5167-5295)
	20-192, gnl\|fr1\|chrUn (80286559-80286430)
	20-192, gnl\|galGal2\|chrUn (8782679-8782558)
	20-192, gnl\|hg17\|chr8 (35743943-35744071)
	20-192, gnl\|Hg17\|chr8 (35743959-35744130)
	20-192, gnl\|loxAfr1\|scaffold_728 (141235-141356)
	20-192, gnl\|mm7\|chr8 (27426860-27426723)
	20-192, gnl\|Mm7\|chr8 (27426833-27426662)
	20-192, gnl\|monDom2\|scaffold_1 (88052427-88052292)
	20-192, gnl\|oryCun1\|scaffold_180359 (15021-15156)
	20-192, gnl\|panTro1\|chr7 (36955515-36955643)
	20-192, gnl\|rheMac2\|chr8 (36136418-36136546)
	20-192, gnl\|rn3\|chr16 (67643664-67643802)
	20-192, gnl\|tetNig1\|chrUn_random (2025680-2025551)
	20-192, gnl\|xenTro1\|scaffold_5 (2741878-2741765)