Non-Coding RNA Search

rpigcb_3321.y1

Sequence:


               
               ACAGGCTTGGATTTCCGACCCGTAGTGCCTCCAGCAAATGGGGTTGAAGGAGTCAGAGTG
GAACAGGATGATGATCAGGATAGCTCTTCCCTGAAGCTTTCTCAGAACATTGCTGTCCAG
ACTGACTTTAAGACGGCAGATTCAGAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAGGCTTGGATTTCCGACCCGTAGTGCCTCCAGCAAATGGGGTTGAAGGAGTCAGAGTG
GAACAGGATGATGATCAGGATAGCTCTTCCCTGAAGCTTTCTCAGAACATTGCTGTCCAG
ACTGACTTTAAGACGGCAGATTCAGAGGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-96, - strand, RNAz p=0.75125

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-96, - strand, RNAz p=0.75125

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               2-120, gnl|bosTau2|chr15 (9242160-9242278)
               

               
               2-120, gnl|canFam2|chr5 (19366709-19366115)
               

               
               2-120, gnl|dasNov1|scaffold_4916 (11176-11755)
               

               
               2-120, gnl|echTel1|scaffold_308434 (4568-4000)
               

               
               2-120, gnl|hg17|chr11 (116614511-116615090)
               

               
               2-120, gnl|Hg17|chr11 (116614919-116615037)
               

               
               2-120, gnl|loxAfr1|scaffold_7234 (100262-99688)
               

               
               2-120, gnl|mm7|chr9 (45858397-45857826)
               

               
               2-120, gnl|Mm7|chr9 (45857987-45857869)
               

               
               2-120, gnl|monDom2|scaffold_2 (122021536-122020920)
               

               
               2-120, gnl|oryCun1|scaffold_214625 (105909-106485)
               

               
               2-120, gnl|panTro1|chr9 (118615448-118616027)
               

               
               2-120, gnl|rheMac2|chr14 (115638515-115639094)
               

               
               2-120, gnl|rn3|chr8 (48881765-48881194)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-120, gnl|bosTau2|chr15 (9242160-9242278)
               

               
               2-120, gnl|canFam2|chr5 (19366709-19366115)
               

               
               2-120, gnl|dasNov1|scaffold_4916 (11176-11755)
               

               
               2-120, gnl|echTel1|scaffold_308434 (4568-4000)
               

               
               2-120, gnl|hg17|chr11 (116614511-116615090)
               

               
               2-120, gnl|Hg17|chr11 (116614919-116615037)
               

               
               2-120, gnl|loxAfr1|scaffold_7234 (100262-99688)
               

               
               2-120, gnl|mm7|chr9 (45858397-45857826)
               

               
               2-120, gnl|Mm7|chr9 (45857987-45857869)
               

               
               2-120, gnl|monDom2|scaffold_2 (122021536-122020920)
               

               
               2-120, gnl|oryCun1|scaffold_214625 (105909-106485)
               

               
               2-120, gnl|panTro1|chr9 (118615448-118616027)
               

               
               2-120, gnl|rheMac2|chr14 (115638515-115639094)
               

               
               2-120, gnl|rn3|chr8 (48881765-48881194)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-120, gnl\|bosTau2\|chr15 (9242160-9242278)
	2-120, gnl\|canFam2\|chr5 (19366709-19366115)
	2-120, gnl\|dasNov1\|scaffold_4916 (11176-11755)
	2-120, gnl\|echTel1\|scaffold_308434 (4568-4000)
	2-120, gnl\|hg17\|chr11 (116614511-116615090)
	2-120, gnl\|Hg17\|chr11 (116614919-116615037)
	2-120, gnl\|loxAfr1\|scaffold_7234 (100262-99688)
	2-120, gnl\|mm7\|chr9 (45858397-45857826)
	2-120, gnl\|Mm7\|chr9 (45857987-45857869)
	2-120, gnl\|monDom2\|scaffold_2 (122021536-122020920)
	2-120, gnl\|oryCun1\|scaffold_214625 (105909-106485)
	2-120, gnl\|panTro1\|chr9 (118615448-118616027)
	2-120, gnl\|rheMac2\|chr14 (115638515-115639094)
	2-120, gnl\|rn3\|chr8 (48881765-48881194)