Non-Coding RNA Search

rpigcb_3410.y1

Sequence:


               
               GGCATATGTTTACAAGAAAGTGGACATTTGGCTGTATGTGTGCATTGTATGTGTGAGTAT
GCAGCTCTGTGGGTCTGTGCAAGAATTAAGAATGTATTGAGTATATATGGAGTGCGTGTG
GAGTTAAAACCGTGTGCACCATAACAATCTGTGAGGGATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGCGCACATTAAGGTGGCACGGATATGTGTGTGTGAGTTATAAACCCATTATAA
ACATGGGTACAGTACTGATTACAACGATATGTCAAGGGTGTATGTTTCAGAGTCTTTGCT
CATCAATGCACAACAAAGAAAAACATTCTTGGAGCCCCTGCTGTATGTTCATTCCTGCTG
GAAATGAAGACAGTGCAGAGGAGCCTTACTTCTACCTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCATATGTTTACAAGAAAGTGGACATTTGGCTGTATGTGTGCATTGTATGTGTGAGTAT
GCAGCTCTGTGGGTCTGTGCAAGAATTAAGAATGTATTGAGTATATATGGAGTGCGTGTG
GAGTTAAAACCGTGTGCACCATAACAATCTGTGAGGGATGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGCGCACATTAAGGTGGCACGGATATGTGTGTGTGAGTTATAAACCCATTATAA
ACATGGGTACAGTACTGATTACAACGATATGTCAAGGGTGTATGTTTCAGAGTCTTTGCT
CATCAATGCACAACAAAGAAAAACATTCTTGGAGCCCCTGCTGTATGTTCATTCCTGCTG
GAAATGAAGACAGTGCAGAGGAGCCTTACTTCTACCTCAAG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               46-231, gnl|bosTau2|chrX (25637319-25637127)
               

               
               46-231, gnl|canFam2|chrX (41191453-41191688)
               

               
               46-231, gnl|dasNov1|scaffold_18717 (17652-17471)
               

               
               46-231, gnl|hg17|chrX (47238204-47238376)
               

               
               46-231, gnl|loxAfr1|scaffold_59650 (5-204)
               

               
               46-231, gnl|mm7|chrX (19357204-19357381)
               

               
               46-231, gnl|panTro1|chrX (48821771-48821943)
               

               
               46-231, gnl|rheMac2|chrX (45447284-45447462)
               

               
               46-231, gnl|rn3|chrX (12588729-12588894)
               


               
               237-380, gnl|bosTau2|chrX (25636920-25636776)
               

               
               237-380, gnl|Hg17|chrX (47238201-47238059)
               

               
               237-380, gnl|Mm7|chrX (19357202-19357059)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-231, gnl|bosTau2|chrX (25637319-25637127)
               

               
               46-231, gnl|canFam2|chrX (41191453-41191688)
               

               
               46-231, gnl|dasNov1|scaffold_18717 (17652-17471)
               

               
               46-231, gnl|hg17|chrX (47238204-47238376)
               

               
               46-231, gnl|loxAfr1|scaffold_59650 (5-204)
               

               
               46-231, gnl|mm7|chrX (19357204-19357381)
               

               
               46-231, gnl|panTro1|chrX (48821771-48821943)
               

               
               46-231, gnl|rheMac2|chrX (45447284-45447462)
               

               
               46-231, gnl|rn3|chrX (12588729-12588894)
               


               
               237-380, gnl|bosTau2|chrX (25636920-25636776)
               

               
               237-380, gnl|Hg17|chrX (47238201-47238059)
               

               
               237-380, gnl|Mm7|chrX (19357202-19357059)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	46-231, gnl\|bosTau2\|chrX (25637319-25637127)
	46-231, gnl\|canFam2\|chrX (41191453-41191688)
	46-231, gnl\|dasNov1\|scaffold_18717 (17652-17471)
	46-231, gnl\|hg17\|chrX (47238204-47238376)
	46-231, gnl\|loxAfr1\|scaffold_59650 (5-204)
	46-231, gnl\|mm7\|chrX (19357204-19357381)
	46-231, gnl\|panTro1\|chrX (48821771-48821943)
	46-231, gnl\|rheMac2\|chrX (45447284-45447462)
	46-231, gnl\|rn3\|chrX (12588729-12588894)

	237-380, gnl\|bosTau2\|chrX (25636920-25636776)
	237-380, gnl\|Hg17\|chrX (47238201-47238059)
	237-380, gnl\|Mm7\|chrX (19357202-19357059)