Non-Coding RNA Search

rpigcb_3435.y1

Sequence:


               
               CTAAAATATATAATTTATAGTTAAGGCTAAAAAGAATATTTATTGCAGAGGATGCTCGTA
AGGCCAGTACGATTTATAAAGTAATGCAATCTCCCGGTGATTTACACACAGACACACACT
TTTCTGCCTTAGATGTTGCAGGTGTAGTACAGTTTATGAAAGTTAGGTCCTTTTATAGGA
GAGGGGAAAAAAGAAACAGTCCCAAGATACAACACAACGACTTTGATTCGGCTGATTTGG
CCTGTCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAAATATATAATTTATAGTTAAGGCTAAAAAGAATATTTATTGCAGAGGATGCTCGTA
AGGCCAGTACGATTTATAAAGTAATGCAATCTCCCGGTGATTTACACACAGACACACACT
TTTCTGCCTTAGATGTTGCAGGTGTAGTACAGTTTATGAAAGTTAGGTCCTTTTATAGGA
GAGGGGAAAAAAGAAACAGTCCCAAGATACAACACAACGACTTTGATTCGGCTGATTTGG
CCTGTCCG

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               1-119, gnl|bosTau2|chr29 (40822147-40822266)
               

               
               1-119, gnl|canFam2|chr18 (51526824-51526706)
               

               
               1-119, gnl|dasNov1|scaffold_132889 (830-698)
               

               
               1-119, gnl|echTel1|scaffold_225396 (929-777)
               

               
               1-119, gnl|galGal2|chr5 (14794257-14794389)
               

               
               1-119, gnl|hg17|chr11 (69176589-69176717)
               

               
               1-119, gnl|Hg17|chr11 (69176618-69176732)
               

               
               1-119, gnl|loxAfr1|scaffold_82463 (6119-6251)
               

               
               1-119, gnl|mm7|chr7 (141356636-141356511)
               

               
               1-119, gnl|Mm7|chr7 (141356608-141356500)
               

               
               1-119, gnl|monDom2|scaffold_182 (977104-977236)
               

               
               1-119, gnl|oryCun1|scaffold_141319 (4048-3934)
               

               
               1-119, gnl|panTro1|chr9_random (32973441-32973313)
               

               
               1-119, gnl|rheMac2|chr14 (5117466-5117338)
               

               
               1-119, gnl|rn3|chr1 (205512214-205512086)
               

               
               1-119, gnl|xenTro1|scaffold_76 (753322-753212)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr29 (40822147-40822266)
               

               
               1-119, gnl|canFam2|chr18 (51526824-51526706)
               

               
               1-119, gnl|dasNov1|scaffold_132889 (830-698)
               

               
               1-119, gnl|echTel1|scaffold_225396 (929-777)
               

               
               1-119, gnl|galGal2|chr5 (14794257-14794389)
               

               
               1-119, gnl|hg17|chr11 (69176589-69176717)
               

               
               1-119, gnl|Hg17|chr11 (69176618-69176732)
               

               
               1-119, gnl|loxAfr1|scaffold_82463 (6119-6251)
               

               
               1-119, gnl|mm7|chr7 (141356636-141356511)
               

               
               1-119, gnl|Mm7|chr7 (141356608-141356500)
               

               
               1-119, gnl|monDom2|scaffold_182 (977104-977236)
               

               
               1-119, gnl|oryCun1|scaffold_141319 (4048-3934)
               

               
               1-119, gnl|panTro1|chr9_random (32973441-32973313)
               

               
               1-119, gnl|rheMac2|chr14 (5117466-5117338)
               

               
               1-119, gnl|rn3|chr1 (205512214-205512086)
               

               
               1-119, gnl|xenTro1|scaffold_76 (753322-753212)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-119, gnl\|bosTau2\|chr29 (40822147-40822266)
	1-119, gnl\|canFam2\|chr18 (51526824-51526706)
	1-119, gnl\|dasNov1\|scaffold_132889 (830-698)
	1-119, gnl\|echTel1\|scaffold_225396 (929-777)
	1-119, gnl\|galGal2\|chr5 (14794257-14794389)
	1-119, gnl\|hg17\|chr11 (69176589-69176717)
	1-119, gnl\|Hg17\|chr11 (69176618-69176732)
	1-119, gnl\|loxAfr1\|scaffold_82463 (6119-6251)
	1-119, gnl\|mm7\|chr7 (141356636-141356511)
	1-119, gnl\|Mm7\|chr7 (141356608-141356500)
	1-119, gnl\|monDom2\|scaffold_182 (977104-977236)
	1-119, gnl\|oryCun1\|scaffold_141319 (4048-3934)
	1-119, gnl\|panTro1\|chr9_random (32973441-32973313)
	1-119, gnl\|rheMac2\|chr14 (5117466-5117338)
	1-119, gnl\|rn3\|chr1 (205512214-205512086)
	1-119, gnl\|xenTro1\|scaffold_76 (753322-753212)