Non-Coding RNA Search

rpigcb_3592.y1

Sequence:


               
               GAATGAGAATTTCGGGGGGCGAGTGATAGATGTGGCCGAGGGAATGCCCTGCCACTTGGC
TCTGGCTGCCTGCCATCACTTAAGCTTTCTCTGCCTTCTAGGCTCAAGGGCAGGGTTGTG
CCAGCAACATGGCCCCCCTGTGTCTCCAGAACTGCTGGGTGGGATTGGAGCAGCATTTCT
GGCGTCAGTTTGTGCCGCCAGGACAGGGCCCTGGGGTGGCCAGGCTGCTGGAGCTGCCAG
CCGTTTGGCATTAATTAATCTCCTGGAGGCCTGTCTGTTGAGCCCCTAACAAGGAACAGG
TGTGTCTACCCCAGTGCCCACATGCAACAGGCAGAGGGACAGAGACGGGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATGAGAATTTCGGGGGGCGAGTGATAGATGTGGCCGAGGGAATGCCCTGCCACTTGGC
TCTGGCTGCCTGCCATCACTTAAGCTTTCTCTGCCTTCTAGGCTCAAGGGCAGGGTTGTG
CCAGCAACATGGCCCCCCTGTGTCTCCAGAACTGCTGGGTGGGATTGGAGCAGCATTTCT
GGCGTCAGTTTGTGCCGCCAGGACAGGGCCCTGGGGTGGCCAGGCTGCTGGAGCTGCCAG
CCGTTTGGCATTAATTAATCTCCTGGAGGCCTGTCTGTTGAGCCCCTAACAAGGAACAGG
TGTGTCTACCCCAGTGCCCACATGCAACAGGCAGAGGGACAGAGACGGGAAG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               38-137, - strand, RNAz p=0.680984
               

               
               157-269, - strand, RNAz p=0.722265
               

               
               197-311, + strand, RNAz p=0.840995

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-137, - strand, RNAz p=0.680984
               

               
               157-269, - strand, RNAz p=0.722265
               

               
               197-311, + strand, RNAz p=0.840995

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               38-348, gnl|bosTau2|chr18 (21462466-21462158)
               

               
               38-348, gnl|canFam2|chr2 (61825201-61824764)
               

               
               38-348, gnl|echTel1|scaffold_289395 (377-33)
               

               
               38-348, gnl|hg17|chr16 (56072230-56072642)
               

               
               38-348, gnl|Hg17|chr16 (56072347-56072691)
               

               
               38-348, gnl|mm7|chr8 (93461131-93461497)
               

               
               38-348, gnl|Mm7|chr8 (93461243-93461542)
               

               
               38-348, gnl|monDom2|scaffold_35 (24499472-24499886)
               

               
               38-348, gnl|oryCun1|scaffold_200270 (82063-82414)
               

               
               38-348, gnl|panTro1|chr18 (50181131-50181515)
               

               
               38-348, gnl|rheMac2|chr20 (55828096-55828475)
               

               
               38-348, gnl|rn3|chr19 (10594262-10593909)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-348, gnl|bosTau2|chr18 (21462466-21462158)
               

               
               38-348, gnl|canFam2|chr2 (61825201-61824764)
               

               
               38-348, gnl|echTel1|scaffold_289395 (377-33)
               

               
               38-348, gnl|hg17|chr16 (56072230-56072642)
               

               
               38-348, gnl|Hg17|chr16 (56072347-56072691)
               

               
               38-348, gnl|mm7|chr8 (93461131-93461497)
               

               
               38-348, gnl|Mm7|chr8 (93461243-93461542)
               

               
               38-348, gnl|monDom2|scaffold_35 (24499472-24499886)
               

               
               38-348, gnl|oryCun1|scaffold_200270 (82063-82414)
               

               
               38-348, gnl|panTro1|chr18 (50181131-50181515)
               

               
               38-348, gnl|rheMac2|chr20 (55828096-55828475)
               

               
               38-348, gnl|rn3|chr19 (10594262-10593909)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	38-137, - strand, RNAz p=0.680984
	157-269, - strand, RNAz p=0.722265
	197-311, + strand, RNAz p=0.840995

	38-348, gnl\|bosTau2\|chr18 (21462466-21462158)
	38-348, gnl\|canFam2\|chr2 (61825201-61824764)
	38-348, gnl\|echTel1\|scaffold_289395 (377-33)
	38-348, gnl\|hg17\|chr16 (56072230-56072642)
	38-348, gnl\|Hg17\|chr16 (56072347-56072691)
	38-348, gnl\|mm7\|chr8 (93461131-93461497)
	38-348, gnl\|Mm7\|chr8 (93461243-93461542)
	38-348, gnl\|monDom2\|scaffold_35 (24499472-24499886)
	38-348, gnl\|oryCun1\|scaffold_200270 (82063-82414)
	38-348, gnl\|panTro1\|chr18 (50181131-50181515)
	38-348, gnl\|rheMac2\|chr20 (55828096-55828475)
	38-348, gnl\|rn3\|chr19 (10594262-10593909)