Non-Coding RNA Search

rpigcb_3728.y1

Sequence:


               
               AGGTGGTCCTAATCGAAAGCATGTGCTACCCAGCCCTGCAGTCTGTGCTGGGCCTGTGCC
TCCCCCCAAAACAGTGTGGCCACATCCACAATGCTGACGGACCCTCAGGGCCGGAGGGGA
GATCCATCCAGGCCGACTAACATACCCGCCCTCTCATTTGCAAACCAGACTCAGGGTCAA
GGGCAGCGGCACCATCGAGAAAGCACTGCACACTTGGCTTAAAAGTCAAGCACTTTCGAA
AACATCTGCTTGAAATCGTGTGTGCCACTGATTGAAATGAAAAACAAACTCAGCTGCCAA
GCAACGGTGGGAAGAGGACAAGGAGAAAAGAACTAGTGACAAACAACTAGTTAGCACGTC
ACCACAGATGGTCACAATAAGAAGCCCACACGAGGAAAAATCACAACTAAAAATATTGAG
GTCTTTGCCAAAAGTTACTTTATGTTCCAATATATAAAAATGGTTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTGGTCCTAATCGAAAGCATGTGCTACCCAGCCCTGCAGTCTGTGCTGGGCCTGTGCC
TCCCCCCAAAACAGTGTGGCCACATCCACAATGCTGACGGACCCTCAGGGCCGGAGGGGA
GATCCATCCAGGCCGACTAACATACCCGCCCTCTCATTTGCAAACCAGACTCAGGGTCAA
GGGCAGCGGCACCATCGAGAAAGCACTGCACACTTGGCTTAAAAGTCAAGCACTTTCGAA
AACATCTGCTTGAAATCGTGTGTGCCACTGATTGAAATGAAAAACAAACTCAGCTGCCAA
GCAACGGTGGGAAGAGGACAAGGAGAAAAGAACTAGTGACAAACAACTAGTTAGCACGTC
ACCACAGATGGTCACAATAAGAAGCCCACACGAGGAAAAATCACAACTAAAAATATTGAG
GTCTTTGCCAAAAGTTACTTTATGTTCCAATATATAAAAATGGTTCT

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               198-459, gnl|bosTau2|chr9 (50099863-50099602)
               

               
               198-459, gnl|canFam2|chr1 (42210031-42210421)
               

               
               198-459, gnl|echTel1|scaffold_290778 (38862-38561)
               

               
               198-459, gnl|hg17|chr6 (148580968-148581348)
               

               
               198-459, gnl|Hg17|chr6 (148580970-148581250)
               

               
               198-459, gnl|loxAfr1|scaffold_3754 (1904-1555)
               

               
               198-459, gnl|mm7|chr10 (8698761-8698428)
               

               
               198-459, gnl|Mm7|chr10 (8698757-8698507)
               

               
               198-459, gnl|oryCun1|scaffold_192515 (81242-81603)
               

               
               198-459, gnl|panTro1|chr5 (152018548-152018928)
               

               
               198-459, gnl|rheMac2|chr4 (115101175-115100802)
               

               
               198-459, gnl|rn3|chr1 (3615528-3615172)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               198-459, gnl|bosTau2|chr9 (50099863-50099602)
               

               
               198-459, gnl|canFam2|chr1 (42210031-42210421)
               

               
               198-459, gnl|echTel1|scaffold_290778 (38862-38561)
               

               
               198-459, gnl|hg17|chr6 (148580968-148581348)
               

               
               198-459, gnl|Hg17|chr6 (148580970-148581250)
               

               
               198-459, gnl|loxAfr1|scaffold_3754 (1904-1555)
               

               
               198-459, gnl|mm7|chr10 (8698761-8698428)
               

               
               198-459, gnl|Mm7|chr10 (8698757-8698507)
               

               
               198-459, gnl|oryCun1|scaffold_192515 (81242-81603)
               

               
               198-459, gnl|panTro1|chr5 (152018548-152018928)
               

               
               198-459, gnl|rheMac2|chr4 (115101175-115100802)
               

               
               198-459, gnl|rn3|chr1 (3615528-3615172)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	198-459, gnl\|bosTau2\|chr9 (50099863-50099602)
	198-459, gnl\|canFam2\|chr1 (42210031-42210421)
	198-459, gnl\|echTel1\|scaffold_290778 (38862-38561)
	198-459, gnl\|hg17\|chr6 (148580968-148581348)
	198-459, gnl\|Hg17\|chr6 (148580970-148581250)
	198-459, gnl\|loxAfr1\|scaffold_3754 (1904-1555)
	198-459, gnl\|mm7\|chr10 (8698761-8698428)
	198-459, gnl\|Mm7\|chr10 (8698757-8698507)
	198-459, gnl\|oryCun1\|scaffold_192515 (81242-81603)
	198-459, gnl\|panTro1\|chr5 (152018548-152018928)
	198-459, gnl\|rheMac2\|chr4 (115101175-115100802)
	198-459, gnl\|rn3\|chr1 (3615528-3615172)