Non-Coding RNA Search

rpigcb_3745.y1

Sequence:


               
               CACCACTCGGCCTGAGTTCTGTTCGCCCCTCGGCCTTGGGAGCAGCGTTCTCCCGGGGAC
TTCTGACTCCGCGTATCCGCCATTACCTAGATCCAAGATGAATAGCGATCAAGTTACATT
GGTTGGTCAAGTGTTTGAGTCCTATGTTTCGGAGTACCATAAGAACGATATTCTTCTCAT
CTTGGAGGAAGGAGATGAAGATGCTCATTACCCAGTTGTGGTTAATGCCATGACCCTGTT
TGAGACCAACATGGAAATTGGGGAATATTTCAATGCATTCCCCAATGAAGTGCTAACTAT
TTTTGATAGCGCCCTACGAAGATCAGCCTTGACAATTCTTCAGTCCCTCTCTCAGTCTGA
AGGTGTCTCCATGAAGCAGAATCTTCATGCCAGGATATCAGGATTGCCTGTTTGTCCCGA
GCTGGTGAGGGAGCACATCCCAAAAACCAAGGATGTGGGACACTTTTTATCTGTCACTGG
GACAGTGATCCGAACAAGTCTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACCACTCGGCCTGAGTTCTGTTCGCCCCTCGGCCTTGGGAGCAGCGTTCTCCCGGGGAC
TTCTGACTCCGCGTATCCGCCATTACCTAGATCCAAGATGAATAGCGATCAAGTTACATT
GGTTGGTCAAGTGTTTGAGTCCTATGTTTCGGAGTACCATAAGAACGATATTCTTCTCAT
CTTGGAGGAAGGAGATGAAGATGCTCATTACCCAGTTGTGGTTAATGCCATGACCCTGTT
TGAGACCAACATGGAAATTGGGGAATATTTCAATGCATTCCCCAATGAAGTGCTAACTAT
TTTTGATAGCGCCCTACGAAGATCAGCCTTGACAATTCTTCAGTCCCTCTCTCAGTCTGA
AGGTGTCTCCATGAAGCAGAATCTTCATGCCAGGATATCAGGATTGCCTGTTTGTCCCGA
GCTGGTGAGGGAGCACATCCCAAAAACCAAGGATGTGGGACACTTTTTATCTGTCACTGG
GACAGTGATCCGAACAAGTCTGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858830|ref|XP_584574.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858830|ref|XP_584574.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               83-320, + strand, RNAz p=0.893311

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-320, + strand, RNAz p=0.893311

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               83-402, gnl|bosTau2|chr9 (13988352-13988670)
               

               
               83-402, gnl|Hg17|chr6 (119294602-119294283)
               

               
               83-402, gnl|Mm7|chr10 (53443092-53442773)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-402, gnl|bosTau2|chr9 (13988352-13988670)
               

               
               83-402, gnl|Hg17|chr6 (119294602-119294283)
               

               
               83-402, gnl|Mm7|chr10 (53443092-53442773)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	83-402, gnl\|bosTau2\|chr9 (13988352-13988670)
	83-402, gnl\|Hg17\|chr6 (119294602-119294283)
	83-402, gnl\|Mm7\|chr10 (53443092-53442773)