Non-Coding RNA Search

rpigcb_4128.y1

Sequence:


               
               AGCGACTCGTCATCCTCCTCGTCTTCTTCCCCAGGACAGACACCACAGAGCCCCAGCCTC
CTGTCCAAGAGAAAGAAAGTCAAGATGAAGCGAGAAAAGGCCTCCTCCTCCGGGAAGCGC
CAGTCCTCGCGCTCAGTGGAATCGGACCCCGCCGTGCTGAGCATTGGGGGCAGCAAGCCC
GAGGACATGCTGTGGTTCCATCGCGCCCTGACCTTGCTCATCATCCTCCGGCACCTCACC
AGGAAGGACCCGCAGGGGCTGGGTGTGACCAGCGATGCGATCGCCGATGCCTGCCAGGCC
CTGGTGGGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCGACTCGTCATCCTCCTCGTCTTCTTCCCCAGGACAGACACCACAGAGCCCCAGCCTC
CTGTCCAAGAGAAAGAAAGTCAAGATGAAGCGAGAAAAGGCCTCCTCCTCCGGGAAGCGC
CAGTCCTCGCGCTCAGTGGAATCGGACCCCGCCGTGCTGAGCATTGGGGGCAGCAAGCCC
GAGGACATGCTGTGGTTCCATCGCGCCCTGACCTTGCTCATCATCCTCCGGCACCTCACC
AGGAAGGACCCGCAGGGGCTGGGTGTGACCAGCGATGCGATCGCCGATGCCTGCCAGGCC
CTGGTGGGTCCC

Aligned organism(s): 18 entry(ies)

More info

Aligned organism(s): 18 entry(ies)

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               1-312, gnl|bosTau2|chr17 (37008271-37007960)
               

               
               1-312, gnl|canFam2|chr26 (12803218-12803775)
               

               
               1-312, gnl|danRer3|chr1 (40608219-40607643)
               

               
               1-312, gnl|dasNov1|scaffold_855 (3717-4275)
               

               
               1-312, gnl|echTel1|scaffold_319323 (65088-64533)
               

               
               1-312, gnl|fr1|chrUn (254709507-254708911)
               

               
               1-312, gnl|galGal2|chrUn (35228251-35227694)
               

               
               1-312, gnl|hg17|chr12 (111085114-111085671)
               

               
               1-312, gnl|Hg17|chr12 (111085625-111085314)
               

               
               1-312, gnl|loxAfr1|scaffold_16556 (11578-11021)
               

               
               1-312, gnl|mm7|chr5 (120583310-120582753)
               

               
               1-312, gnl|Mm7|chr5 (120582797-120583108)
               

               
               1-312, gnl|monDom2|scaffold_110 (283226-283783)
               

               
               1-312, gnl|panTro1|chr10 (113784769-113785326)
               

               
               1-312, gnl|rheMac2|chr11 (113106055-113106612)
               

               
               1-312, gnl|rn3|chr12 (36199063-36199620)
               

               
               1-312, gnl|tetNig1|chrUn_random (108466315-108466905)
               

               
               1-312, gnl|xenTro1|scaffold_1037 (119299-119853)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-312, gnl|bosTau2|chr17 (37008271-37007960)
               

               
               1-312, gnl|canFam2|chr26 (12803218-12803775)
               

               
               1-312, gnl|danRer3|chr1 (40608219-40607643)
               

               
               1-312, gnl|dasNov1|scaffold_855 (3717-4275)
               

               
               1-312, gnl|echTel1|scaffold_319323 (65088-64533)
               

               
               1-312, gnl|fr1|chrUn (254709507-254708911)
               

               
               1-312, gnl|galGal2|chrUn (35228251-35227694)
               

               
               1-312, gnl|hg17|chr12 (111085114-111085671)
               

               
               1-312, gnl|Hg17|chr12 (111085625-111085314)
               

               
               1-312, gnl|loxAfr1|scaffold_16556 (11578-11021)
               

               
               1-312, gnl|mm7|chr5 (120583310-120582753)
               

               
               1-312, gnl|Mm7|chr5 (120582797-120583108)
               

               
               1-312, gnl|monDom2|scaffold_110 (283226-283783)
               

               
               1-312, gnl|panTro1|chr10 (113784769-113785326)
               

               
               1-312, gnl|rheMac2|chr11 (113106055-113106612)
               

               
               1-312, gnl|rn3|chr12 (36199063-36199620)
               

               
               1-312, gnl|tetNig1|chrUn_random (108466315-108466905)
               

               
               1-312, gnl|xenTro1|scaffold_1037 (119299-119853)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-312, gnl\|bosTau2\|chr17 (37008271-37007960)
	1-312, gnl\|canFam2\|chr26 (12803218-12803775)
	1-312, gnl\|danRer3\|chr1 (40608219-40607643)
	1-312, gnl\|dasNov1\|scaffold_855 (3717-4275)
	1-312, gnl\|echTel1\|scaffold_319323 (65088-64533)
	1-312, gnl\|fr1\|chrUn (254709507-254708911)
	1-312, gnl\|galGal2\|chrUn (35228251-35227694)
	1-312, gnl\|hg17\|chr12 (111085114-111085671)
	1-312, gnl\|Hg17\|chr12 (111085625-111085314)
	1-312, gnl\|loxAfr1\|scaffold_16556 (11578-11021)
	1-312, gnl\|mm7\|chr5 (120583310-120582753)
	1-312, gnl\|Mm7\|chr5 (120582797-120583108)
	1-312, gnl\|monDom2\|scaffold_110 (283226-283783)
	1-312, gnl\|panTro1\|chr10 (113784769-113785326)
	1-312, gnl\|rheMac2\|chr11 (113106055-113106612)
	1-312, gnl\|rn3\|chr12 (36199063-36199620)
	1-312, gnl\|tetNig1\|chrUn_random (108466315-108466905)
	1-312, gnl\|xenTro1\|scaffold_1037 (119299-119853)