Non-Coding RNA Search

rpigcb_5132.y1

Sequence:


               
               CTATGAATGACTGAAACAAAGTGGCCCCACTCCATGTGTGAGAACCCGTGCGGACAGATT
TCCACATGTAAGTAGAAGAAAGTCATTGCTGCCCATAGAGGAACAGAAACACAACAGCCA
AAGAGGAAATTCACTTGCATCAAGCAGAGATCGAACTGCCTATCAGCTACATACTCTCGC
TTGGCCACAAGAGAATCACCTTCCATTTTTAGAGTCTAAGATAACAGAACTGTGCCCAGA
AGAGGAACAAGCGTTACTGCTCTACTGGTATCAGCTCTGTAAACAGGTTCCTTTAAAGCT
TTGACTCTGCTATGTTTTCTTGCCTATTCGATTTGCTTAGCCCCGAAAAGAAGAACCAAC
ACACAACTCAATCAAGTTCTAAGACATTGATCTGGTTCTGTGGGCATGTCTAGTATGTGA
AGAATGTGAAAGAATCATGTCTTTTAGTAAAAAAAAAAAAAATTGTTGGTGATAGTAATC
ACAGAACTTTCTTTTATTCTCTCAGTTCTCTTTAGCACTAATAGTGTTGGTATAATAAGA
AGAGAGAAGTTTGACAGAAAGTAGGAAGTTGCATTAGTGGAAAAGTACTTGAGCTCTGGA
GCGAAACTCCTGGATTTGAAGGTTTATGCGTATACAGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTATGAATGACTGAAACAAAGTGGCCCCACTCCATGTGTGAGAACCCGTGCGGACAGATT
TCCACATGTAAGTAGAAGAAAGTCATTGCTGCCCATAGAGGAACAGAAACACAACAGCCA
AAGAGGAAATTCACTTGCATCAAGCAGAGATCGAACTGCCTATCAGCTACATACTCTCGC
TTGGCCACAAGAGAATCACCTTCCATTTTTAGAGTCTAAGATAACAGAACTGTGCCCAGA
AGAGGAACAAGCGTTACTGCTCTACTGGTATCAGCTCTGTAAACAGGTTCCTTTAAAGCT
TTGACTCTGCTATGTTTTCTTGCCTATTCGATTTGCTTAGCCCCGAAAAGAAGAACCAAC
ACACAACTCAATCAAGTTCTAAGACATTGATCTGGTTCTGTGGGCATGTCTAGTATGTGA
AGAATGTGAAAGAATCATGTCTTTTAGTAAAAAAAAAAAAAATTGTTGGTGATAGTAATC
ACAGAACTTTCTTTTATTCTCTCAGTTCTCTTTAGCACTAATAGTGTTGGTATAATAAGA
AGAGAGAAGTTTGACAGAAAGTAGGAAGTTGCATTAGTGGAAAAGTACTTGAGCTCTGGA
GCGAAACTCCTGGATTTGAAGGTTTATGCGTATACAGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               492-605, - strand, RNAz p=0.987709

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               492-605, - strand, RNAz p=0.987709

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-628, gnl|bosTau2|chr6 (9478451-9479082)
               

               
               5-628, gnl|Hg17|chr4 (101100593-101099971)
               

               
               5-628, gnl|Mm7|chr3 (137783225-137783834)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-628, gnl|bosTau2|chr6 (9478451-9479082)
               

               
               5-628, gnl|Hg17|chr4 (101100593-101099971)
               

               
               5-628, gnl|Mm7|chr3 (137783225-137783834)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	5-628, gnl\|bosTau2\|chr6 (9478451-9479082)
	5-628, gnl\|Hg17\|chr4 (101100593-101099971)
	5-628, gnl\|Mm7\|chr3 (137783225-137783834)