Non-Coding RNA Search

rpigcb_5355.y1

Sequence:


               
               GCTTTCTAGAGGGTGGAATGTGACCCTGCAACTTCAGAAGCACAATCATTTAATAGTTTT
TTTTTCAAAGAGCATCCTATCTACCCACAGTGAGACATCAGCAGGTTCTAGGAACGGAAT
GTGTTTATAACCTAGAGCGTGTTCACTTTTTGGAAACTGCATTTTGGTGTTTTCCTGAAT
ACCTTTCCCTTGTAGGGCTTTCTCCCTCCGCCCAAATCCTAGAGTCCCTTTCAGTGAAGA
GAGGTGGATGCTCTCTGTGAGCTGTTTCTTTTCTCTCTCGACTGACTCATCAGGAACCGC
CTTCTGGTCCGGGGTCTGTCTGTGTGGTGTCCTCGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTCTAGAGGGTGGAATGTGACCCTGCAACTTCAGAAGCACAATCATTTAATAGTTTT
TTTTTCAAAGAGCATCCTATCTACCCACAGTGAGACATCAGCAGGTTCTAGGAACGGAAT
GTGTTTATAACCTAGAGCGTGTTCACTTTTTGGAAACTGCATTTTGGTGTTTTCCTGAAT
ACCTTTCCCTTGTAGGGCTTTCTCCCTCCGCCCAAATCCTAGAGTCCCTTTCAGTGAAGA
GAGGTGGATGCTCTCTGTGAGCTGTTTCTTTTCTCTCTCGACTGACTCATCAGGAACCGC
CTTCTGGTCCGGGGTCTGTCTGTGTGGTGTCCTCGGTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               79-193, - strand, RNAz p=0.962868

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-193, - strand, RNAz p=0.962868

Aligned organism(s): 33 entry(ies)

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Aligned organism(s): 33 entry(ies)

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               1-334, gnl|bosTau2|chr9 (23548606-23548278)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305007)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305052)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305052)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9647)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9692)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9692)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-894)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-946)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-946)
               

               
               1-334, gnl|hg17|chr10 (52092256-52093103)
               

               
               1-334, gnl|hg17|chr10 (81117210-81118008)
               

               
               1-334, gnl|hg17|chr10 (81437406-81438204)
               

               
               1-334, gnl|Hg17|chr6 (107494519-107494193)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55660)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55615)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55615)
               

               
               1-334, gnl|mm7|chr10 (43324214-43325006)
               

               
               1-334, gnl|mm7|chr10 (43324214-43324962)
               

               
               1-334, gnl|mm7|chr10 (43324214-43324962)
               

               
               1-334, gnl|Mm7|chr10 (43324459-43324760)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-11970)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-12015)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-12015)
               

               
               1-334, gnl|panTro1|chr8 (52572849-52572002)
               

               
               1-334, gnl|panTro1|chr8 (82520270-82521068)
               

               
               1-334, gnl|panTro1|chr8 (82520270-82521068)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96399991)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96400023)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96400023)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036076)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036120)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036120)

Aligned organism(s): 33 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-334, gnl|bosTau2|chr9 (23548606-23548278)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305007)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305052)
               

               
               1-334, gnl|canFam2|chr12 (67305942-67305052)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9647)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9692)
               

               
               1-334, gnl|dasNov1|scaffold_5154 (10470-9692)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-894)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-946)
               

               
               1-334, gnl|echTel1|scaffold_175862 (1748-946)
               

               
               1-334, gnl|hg17|chr10 (52092256-52093103)
               

               
               1-334, gnl|hg17|chr10 (81117210-81118008)
               

               
               1-334, gnl|hg17|chr10 (81437406-81438204)
               

               
               1-334, gnl|Hg17|chr6 (107494519-107494193)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55660)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55615)
               

               
               1-334, gnl|loxAfr1|scaffold_1276 (54779-55615)
               

               
               1-334, gnl|mm7|chr10 (43324214-43325006)
               

               
               1-334, gnl|mm7|chr10 (43324214-43324962)
               

               
               1-334, gnl|mm7|chr10 (43324214-43324962)
               

               
               1-334, gnl|Mm7|chr10 (43324459-43324760)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-11970)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-12015)
               

               
               1-334, gnl|oryCun1|scaffold_200599 (12738-12015)
               

               
               1-334, gnl|panTro1|chr8 (52572849-52572002)
               

               
               1-334, gnl|panTro1|chr8 (82520270-82521068)
               

               
               1-334, gnl|panTro1|chr8 (82520270-82521068)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96399991)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96400023)
               

               
               1-334, gnl|rheMac2|chr15 (96400857-96400023)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036076)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036120)
               

               
               1-334, gnl|rn3|chr6 (135036883-135036120)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-334, gnl\|bosTau2\|chr9 (23548606-23548278)
	1-334, gnl\|canFam2\|chr12 (67305942-67305007)
	1-334, gnl\|canFam2\|chr12 (67305942-67305052)
	1-334, gnl\|canFam2\|chr12 (67305942-67305052)
	1-334, gnl\|dasNov1\|scaffold_5154 (10470-9647)
	1-334, gnl\|dasNov1\|scaffold_5154 (10470-9692)
	1-334, gnl\|dasNov1\|scaffold_5154 (10470-9692)
	1-334, gnl\|echTel1\|scaffold_175862 (1748-894)
	1-334, gnl\|echTel1\|scaffold_175862 (1748-946)
	1-334, gnl\|echTel1\|scaffold_175862 (1748-946)
	1-334, gnl\|hg17\|chr10 (52092256-52093103)
	1-334, gnl\|hg17\|chr10 (81117210-81118008)
	1-334, gnl\|hg17\|chr10 (81437406-81438204)
	1-334, gnl\|Hg17\|chr6 (107494519-107494193)
	1-334, gnl\|loxAfr1\|scaffold_1276 (54779-55660)
	1-334, gnl\|loxAfr1\|scaffold_1276 (54779-55615)
	1-334, gnl\|loxAfr1\|scaffold_1276 (54779-55615)
	1-334, gnl\|mm7\|chr10 (43324214-43325006)
	1-334, gnl\|mm7\|chr10 (43324214-43324962)
	1-334, gnl\|mm7\|chr10 (43324214-43324962)
	1-334, gnl\|Mm7\|chr10 (43324459-43324760)
	1-334, gnl\|oryCun1\|scaffold_200599 (12738-11970)
	1-334, gnl\|oryCun1\|scaffold_200599 (12738-12015)
	1-334, gnl\|oryCun1\|scaffold_200599 (12738-12015)
	1-334, gnl\|panTro1\|chr8 (52572849-52572002)
	1-334, gnl\|panTro1\|chr8 (82520270-82521068)
	1-334, gnl\|panTro1\|chr8 (82520270-82521068)
	1-334, gnl\|rheMac2\|chr15 (96400857-96399991)
	1-334, gnl\|rheMac2\|chr15 (96400857-96400023)
	1-334, gnl\|rheMac2\|chr15 (96400857-96400023)
	1-334, gnl\|rn3\|chr6 (135036883-135036076)
	1-334, gnl\|rn3\|chr6 (135036883-135036120)
	1-334, gnl\|rn3\|chr6 (135036883-135036120)