Non-Coding RNA Search

rpigcb_6352.y1

Sequence:


               
               AGGTCAGAGCTGAGCACTCATACCCGAGGGAAGAGGTTCCAGTAGGTCTGGACTGACCTT
TCTACACTCTTGGTCCCAGTTGGCTGTAACACCAAGGGCTGTGGTCTGTGCTGCTTTGCC
ACTGCTGCTGTCTGCTCACTGTCCTGCCTGCTGCCCTTTATAGCTCCCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGTCAGAGCTGAGCACTCATACCCGAGGGAAGAGGTTCCAGTAGGTCTGGACTGACCTT
TCTACACTCTTGGTCCCAGTTGGCTGTAACACCAAGGGCTGTGGTCTGTGCTGCTTTGCC
ACTGCTGCTGTCTGCTCACTGTCCTGCCTGCTGCCCTTTATAGCTCCCTGT

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-169, gnl|bosTau2|chr18 (32348087-32347917)
               

               
               1-169, gnl|canFam2|chr5 (80631636-80632381)
               

               
               1-169, gnl|dasNov1|scaffold_6757 (9939-10668)
               

               
               1-169, gnl|echTel1|scaffold_312513 (52531-53193)
               

               
               1-169, gnl|hg17|chr16 (70446272-70447011)
               

               
               1-169, gnl|Hg17|chr16 (70446335-70446506)
               

               
               1-169, gnl|mm7|chr8 (108328925-108328262)
               

               
               1-169, gnl|Mm7|chr8 (108328858-108328704)
               

               
               1-169, gnl|monDom2|scaffold_23 (1062569-1063302)
               

               
               1-169, gnl|oryCun1|scaffold_209525 (157693-156962)
               

               
               1-169, gnl|panTro1|chr18 (64806640-64807376)
               

               
               1-169, gnl|rheMac2|chr20 (70796472-70795732)
               

               
               1-169, gnl|rn3|chr19 (39612936-39612272)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-169, gnl|bosTau2|chr18 (32348087-32347917)
               

               
               1-169, gnl|canFam2|chr5 (80631636-80632381)
               

               
               1-169, gnl|dasNov1|scaffold_6757 (9939-10668)
               

               
               1-169, gnl|echTel1|scaffold_312513 (52531-53193)
               

               
               1-169, gnl|hg17|chr16 (70446272-70447011)
               

               
               1-169, gnl|Hg17|chr16 (70446335-70446506)
               

               
               1-169, gnl|mm7|chr8 (108328925-108328262)
               

               
               1-169, gnl|Mm7|chr8 (108328858-108328704)
               

               
               1-169, gnl|monDom2|scaffold_23 (1062569-1063302)
               

               
               1-169, gnl|oryCun1|scaffold_209525 (157693-156962)
               

               
               1-169, gnl|panTro1|chr18 (64806640-64807376)
               

               
               1-169, gnl|rheMac2|chr20 (70796472-70795732)
               

               
               1-169, gnl|rn3|chr19 (39612936-39612272)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-169, gnl\|bosTau2\|chr18 (32348087-32347917)
	1-169, gnl\|canFam2\|chr5 (80631636-80632381)
	1-169, gnl\|dasNov1\|scaffold_6757 (9939-10668)
	1-169, gnl\|echTel1\|scaffold_312513 (52531-53193)
	1-169, gnl\|hg17\|chr16 (70446272-70447011)
	1-169, gnl\|Hg17\|chr16 (70446335-70446506)
	1-169, gnl\|mm7\|chr8 (108328925-108328262)
	1-169, gnl\|Mm7\|chr8 (108328858-108328704)
	1-169, gnl\|monDom2\|scaffold_23 (1062569-1063302)
	1-169, gnl\|oryCun1\|scaffold_209525 (157693-156962)
	1-169, gnl\|panTro1\|chr18 (64806640-64807376)
	1-169, gnl\|rheMac2\|chr20 (70796472-70795732)
	1-169, gnl\|rn3\|chr19 (39612936-39612272)