Non-Coding RNA Search

rpigcb_7039.y1

Sequence:


               
               TGTCTCTCCTCAAAGCCATTTTCTCCAGTTTTGAGCAGTGTTCTGGTGAACTCTCTCTAC
CTGTTCATTTACAGGGAGTGAAGAGTAAAGGGCAAGCCCAGGTTGCTGTCACCTTATATC
AGCATGTTTGCATTCATCTGTGTGCATTTATTGCTTCCTTTCATCCCTCACTGTTCCCTG
AACTGGATACTGCTCTGTTGAATGCTGTGCTTGGTGCTAATATGATCACCTCTTTGTTAG
ATATGGATGCGTGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTCTCTCCTCAAAGCCATTTTCTCCAGTTTTGAGCAGTGTTCTGGTGAACTCTCTCTAC
CTGTTCATTTACAGGGAGTGAAGAGTAAAGGGCAAGCCCAGGTTGCTGTCACCTTATATC
AGCATGTTTGCATTCATCTGTGTGCATTTATTGCTTCCTTTCATCCCTCACTGTTCCCTG
AACTGGATACTGCTCTGTTGAATGCTGTGCTTGGTGCTAATATGATCACCTCTTTGTTAG
ATATGGATGCGTGGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-91, - strand, RNAz p=0.68034
               

               
               69-186, + strand, RNAz p=0.750845

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-91, - strand, RNAz p=0.68034
               

               
               69-186, + strand, RNAz p=0.750845

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-186, gnl|bosTau2|chr16 (25660026-25660212)
               

               
               1-186, gnl|canFam2|chr7 (31778067-31777851)
               

               
               1-186, gnl|danRer3|chr20 (42624999-42625209)
               

               
               1-186, gnl|dasNov1|scaffold_77564 (4710-4927)
               

               
               1-186, gnl|echTel1|scaffold_245415 (12820-13036)
               

               
               1-186, gnl|hg17|chr1 (166530038-166530254)
               

               
               1-186, gnl|Hg17|chr1 (166530064-166530249)
               

               
               1-186, gnl|loxAfr1|scaffold_54857 (5401-5617)
               

               
               1-186, gnl|mm7|chr1 (163931746-163931531)
               

               
               1-186, gnl|Mm7|chr1 (163931719-163931534)
               

               
               1-186, gnl|monDom2|scaffold_16 (20991486-20991700)
               

               
               1-186, gnl|oryCun1|scaffold_178539 (51494-51709)
               

               
               1-186, gnl|panTro1|chr1 (148798244-148798460)
               

               
               1-186, gnl|rheMac2|chr1 (199539648-199539864)
               

               
               1-186, gnl|rn3|chr13 (79745706-79745490)
               

               
               1-186, gnl|tetNig1|chr1 (10136379-10136595)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-186, gnl|bosTau2|chr16 (25660026-25660212)
               

               
               1-186, gnl|canFam2|chr7 (31778067-31777851)
               

               
               1-186, gnl|danRer3|chr20 (42624999-42625209)
               

               
               1-186, gnl|dasNov1|scaffold_77564 (4710-4927)
               

               
               1-186, gnl|echTel1|scaffold_245415 (12820-13036)
               

               
               1-186, gnl|hg17|chr1 (166530038-166530254)
               

               
               1-186, gnl|Hg17|chr1 (166530064-166530249)
               

               
               1-186, gnl|loxAfr1|scaffold_54857 (5401-5617)
               

               
               1-186, gnl|mm7|chr1 (163931746-163931531)
               

               
               1-186, gnl|Mm7|chr1 (163931719-163931534)
               

               
               1-186, gnl|monDom2|scaffold_16 (20991486-20991700)
               

               
               1-186, gnl|oryCun1|scaffold_178539 (51494-51709)
               

               
               1-186, gnl|panTro1|chr1 (148798244-148798460)
               

               
               1-186, gnl|rheMac2|chr1 (199539648-199539864)
               

               
               1-186, gnl|rn3|chr13 (79745706-79745490)
               

               
               1-186, gnl|tetNig1|chr1 (10136379-10136595)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-91, - strand, RNAz p=0.68034
	69-186, + strand, RNAz p=0.750845

	1-186, gnl\|bosTau2\|chr16 (25660026-25660212)
	1-186, gnl\|canFam2\|chr7 (31778067-31777851)
	1-186, gnl\|danRer3\|chr20 (42624999-42625209)
	1-186, gnl\|dasNov1\|scaffold_77564 (4710-4927)
	1-186, gnl\|echTel1\|scaffold_245415 (12820-13036)
	1-186, gnl\|hg17\|chr1 (166530038-166530254)
	1-186, gnl\|Hg17\|chr1 (166530064-166530249)
	1-186, gnl\|loxAfr1\|scaffold_54857 (5401-5617)
	1-186, gnl\|mm7\|chr1 (163931746-163931531)
	1-186, gnl\|Mm7\|chr1 (163931719-163931534)
	1-186, gnl\|monDom2\|scaffold_16 (20991486-20991700)
	1-186, gnl\|oryCun1\|scaffold_178539 (51494-51709)
	1-186, gnl\|panTro1\|chr1 (148798244-148798460)
	1-186, gnl\|rheMac2\|chr1 (199539648-199539864)
	1-186, gnl\|rn3\|chr13 (79745706-79745490)
	1-186, gnl\|tetNig1\|chr1 (10136379-10136595)