rpigcb_7231.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCGGCGAGTGGGAGCTGATCCAGGAGTCAGGTGTGCCGCTCAAGCCCCTGTTCGGGCC CGGCTACACGGGCATCCGCAACCTGGGCAACAGCTGCTACCTCAACTCCGTGGTCCAGGT GCTCTTCAGCATCCCCGACTTCCAGAGGAAGTATGTGGATAAGCTGGAAAAGATCTTCCA GAATGCTCCGACGGACCCTACCCAGGACTTCAGCACCCAGGTGGCCAAGCTGGGCCATGG CCTTCTCTCGGGAGAGTATTCCAAGCCAGCGCCAGAGTCGGGCGACGGCGAGCAGGTGCC AGAGCAAAAGGAAGTCCAAGATGGCATTGCCCCTCGGATGTTCAAGGCCCTCATCAGCAA GGGTCACCCCGAGTTCTCCACCAACCGGCAGCAGGATGCCCAAGAGTTCTTCCTTCACCT TA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCGGCGAGTGGGAGCTGATCCAGGAGTCAGGTGTGCCGCTCAAGCCCCTGTTCGGGCC CGGCTACACGGGCATCCGCAACCTGGGCAACAGCTGCTACCTCAACTCCGTGGTCCAGGT GCTCTTCAGCATCCCCGACTTCCAGAGGAAGTATGTGGATAAGCTGGAAAAGATCTTCCA GAATGCTCCGACGGACCCTACCCAGGACTTCAGCACCCAGGTGGCCAAGCTGGGCCATGG CCTTCTCTCGGGAGAGTATTCCAAGCCAGCGCCAGAGTCGGGCGACGGCGAGCAGGTGCC AGAGCAAAAGGAAGTCCAAGATGGCATTGCCCCTCGGATGTTCAAGGCCCTCATCAGCAA GGGTCACCCCGAGTTCTCCACCAACCGGCAGCAGGATGCCCAAGAGTTCTTCCTTCACCT TA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 34-152, - strand, RNAz p=0.786094 | |
| 309-422, - strand, RNAz p=0.747008 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 34-152, - strand, RNAz p=0.786094 | |
| 309-422, - strand, RNAz p=0.747008 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 1-152, gnl|bosTau2|chr5 (60403567-60403416) | |
| 1-152, gnl|Hg17|chr12 (6837893-6838044) | |
| 1-152, gnl|Mm7|chr6 (124849066-124848915) | |
| 309-422, gnl|bosTau2|chr5 (60402145-60402032) | |
| 309-422, gnl|canFam2|chr27 (41192921-41192784) | |
| 309-422, gnl|danRer3|chr16 (6454353-6454216) | |
| 309-422, gnl|dasNov1|scaffold_5223 (48219-48356) | |
| 309-422, gnl|echTel1|scaffold_319441 (50789-50652) | |
| 309-422, gnl|fr1|chrUn (75042438-75042572) | |
| 309-422, gnl|galGal2|chr1 (71356643-71356779) | |
| 309-422, gnl|hg17|chr12 (6839789-6839926) | |
| 309-422, gnl|Hg17|chr12 (6839789-6839902) | |
| 309-422, gnl|loxAfr1|scaffold_11498 (20984-20847) | |
| 309-422, gnl|mm7|chr6 (124847597-124847461) | |
| 309-422, gnl|Mm7|chr6 (124847595-124847482) | |
| 309-422, gnl|monDom2|scaffold_31 (15337600-15337748) | |
| 309-422, gnl|oryCun1|scaffold_215058 (28672-28806) | |
| 309-422, gnl|panTro1|chr10 (7376582-7376719) | |
| 309-422, gnl|rheMac2|chr11 (7041651-7041788) | |
| 309-422, gnl|rn3|chr4 (161189304-161189160) | |
| 309-422, gnl|tetNig1|chr8 (9127494-9127626) | |
| 309-422, gnl|xenTro1|scaffold_811 (490743-490608) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-152, gnl|bosTau2|chr5 (60403567-60403416) | |
| 1-152, gnl|Hg17|chr12 (6837893-6838044) | |
| 1-152, gnl|Mm7|chr6 (124849066-124848915) | |
| 309-422, gnl|bosTau2|chr5 (60402145-60402032) | |
| 309-422, gnl|canFam2|chr27 (41192921-41192784) | |
| 309-422, gnl|danRer3|chr16 (6454353-6454216) | |
| 309-422, gnl|dasNov1|scaffold_5223 (48219-48356) | |
| 309-422, gnl|echTel1|scaffold_319441 (50789-50652) | |
| 309-422, gnl|fr1|chrUn (75042438-75042572) | |
| 309-422, gnl|galGal2|chr1 (71356643-71356779) | |
| 309-422, gnl|hg17|chr12 (6839789-6839926) | |
| 309-422, gnl|Hg17|chr12 (6839789-6839902) | |
| 309-422, gnl|loxAfr1|scaffold_11498 (20984-20847) | |
| 309-422, gnl|mm7|chr6 (124847597-124847461) | |
| 309-422, gnl|Mm7|chr6 (124847595-124847482) | |
| 309-422, gnl|monDom2|scaffold_31 (15337600-15337748) | |
| 309-422, gnl|oryCun1|scaffold_215058 (28672-28806) | |
| 309-422, gnl|panTro1|chr10 (7376582-7376719) | |
| 309-422, gnl|rheMac2|chr11 (7041651-7041788) | |
| 309-422, gnl|rn3|chr4 (161189304-161189160) | |
| 309-422, gnl|tetNig1|chr8 (9127494-9127626) | |
| 309-422, gnl|xenTro1|scaffold_811 (490743-490608) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |