Non-Coding RNA Search

rpigcb_7958.y1

Sequence:


               
               GATCGCTGTGGTTAGTGAGCATTCAGGACCCGAAAACCCAGGATGAACTTGTGTCCACCC
CAGAGATCACCGCAGGAGTCATGAGATGCCCTGTGTGTCACTGGCTTGACCCGGGCCACT
TCCTCCATCCTCACCTGCCCTGATGCTGTCCCCCCTGAGGAGGAGGAAATTCGCTCTTTG
AAGAGGAAGTGCTTCCTTGTTGCGGGCACTGACCTCTTACCGCAGGAGGCGGGGAATGAC
GGAGTATATTTGGTTCAGGTGATCAGAGCACAGGCCCGTTTTTGGGATCGCACAGGGATC
AGCCACAGAATGTCCCTTCCCAGGACAAGGGAGGGCAGGGGTCCCCGAGACCAACCCCCA
ACTCCCAGTTGGGAAGAGGCCCGGGAAAGATGGAACTGGCATCATCCAGAGAAACGTCGC
CTCTTCGAGGATGCCTTCTTCCAGGCTGAGGGTTATATCCGCCGGGGTTCCGAGGAATGC
CAGAAGTTCTGGTCCTTCTTTGAACGCATGCAGAGATTCCAGAGCCTCAGGGCTACCGGG
AAGCAGGAGGAAGAGGCGGGGCGTCTCAGGCACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCGCTGTGGTTAGTGAGCATTCAGGACCCGAAAACCCAGGATGAACTTGTGTCCACCC
CAGAGATCACCGCAGGAGTCATGAGATGCCCTGTGTGTCACTGGCTTGACCCGGGCCACT
TCCTCCATCCTCACCTGCCCTGATGCTGTCCCCCCTGAGGAGGAGGAAATTCGCTCTTTG
AAGAGGAAGTGCTTCCTTGTTGCGGGCACTGACCTCTTACCGCAGGAGGCGGGGAATGAC
GGAGTATATTTGGTTCAGGTGATCAGAGCACAGGCCCGTTTTTGGGATCGCACAGGGATC
AGCCACAGAATGTCCCTTCCCAGGACAAGGGAGGGCAGGGGTCCCCGAGACCAACCCCCA
ACTCCCAGTTGGGAAGAGGCCCGGGAAAGATGGAACTGGCATCATCCAGAGAAACGTCGC
CTCTTCGAGGATGCCTTCTTCCAGGCTGAGGGTTATATCCGCCGGGGTTCCGAGGAATGC
CAGAAGTTCTGGTCCTTCTTTGAACGCATGCAGAGATTCCAGAGCCTCAGGGCTACCGGG
AAGCAGGAGGAAGAGGCGGGGCGTCTCAGGCACTG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               20-130, - strand, RNAz p=0.989526
               

               
               289-442, - strand, RNAz p=0.966892

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-130, - strand, RNAz p=0.989526
               

               
               289-442, - strand, RNAz p=0.966892

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               301-425, - strand, RNAmicro p=0.998398

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               301-425, - strand, RNAmicro p=0.998398

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-573, gnl|bosTau2|chr18 (47332068-47332626)
               

               
               20-573, gnl|Hg17|chr19 (52547851-52548391)
               

               
               20-573, gnl|Mm7|chr7 (13981361-13980833)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-573, gnl|bosTau2|chr18 (47332068-47332626)
               

               
               20-573, gnl|Hg17|chr19 (52547851-52548391)
               

               
               20-573, gnl|Mm7|chr7 (13981361-13980833)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	20-130, - strand, RNAz p=0.989526
	289-442, - strand, RNAz p=0.966892

	20-573, gnl\|bosTau2\|chr18 (47332068-47332626)
	20-573, gnl\|Hg17\|chr19 (52547851-52548391)
	20-573, gnl\|Mm7\|chr7 (13981361-13980833)