Non-Coding RNA Search

rpigcb_8296.y1

Sequence:


               
               GGGCTCAGAGCAGGAGTGGCCAGGAGCTGACGCCTGCAGAGCTGCTAATGAAGATCATGA
GCTATAGAGAAGCGGCTTCCGGAAGCTTCCGTCTCTTTATTCAAAACCTGTATGAGGCTG
GGCAACAAGGCATCTTCCCAGGGCTGGCGAGATACTCTTCTCTCCAAGATGTCCCACTGG
CCGTGTTGGAAGGGAACCTGACCCAGGCCACAGAGAACATCCTTCTGGAGCCCTACCTCT
TCTGGCAGATCCTAAATGGCCAGCTCCCCAGATACCCAGGGCCGTACTCGGACTTTAGCG
CGCCTTTGGCGCATCTCGACCTTCGGAGCTGCTGGTGTGTGGATGAGGCTGGCCGCAAAC
TGGAGGGCACCCAGACTGAGCCCAGCAAGGTCCCAGCGTGTGAGTTAAACCATGAAGAAC
TGAATGTGTGTGTGTGTGTTTAAAGGATATGTGGTGGGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTCAGAGCAGGAGTGGCCAGGAGCTGACGCCTGCAGAGCTGCTAATGAAGATCATGA
GCTATAGAGAAGCGGCTTCCGGAAGCTTCCGTCTCTTTATTCAAAACCTGTATGAGGCTG
GGCAACAAGGCATCTTCCCAGGGCTGGCGAGATACTCTTCTCTCCAAGATGTCCCACTGG
CCGTGTTGGAAGGGAACCTGACCCAGGCCACAGAGAACATCCTTCTGGAGCCCTACCTCT
TCTGGCAGATCCTAAATGGCCAGCTCCCCAGATACCCAGGGCCGTACTCGGACTTTAGCG
CGCCTTTGGCGCATCTCGACCTTCGGAGCTGCTGGTGTGTGGATGAGGCTGGCCGCAAAC
TGGAGGGCACCCAGACTGAGCCCAGCAAGGTCCCAGCGTGTGAGTTAAACCATGAAGAAC
TGAATGTGTGTGTGTGTGTTTAAAGGATATGTGGTGGGAGT

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               2-406, gnl|bosTau2|chr14 (4487756-4488160)
               

               
               2-406, gnl|canFam2|chr13 (32407001-32407311)
               

               
               2-406, gnl|danRer3|chrNA (59711658-59711339)
               

               
               2-406, gnl|dasNov1|scaffold_9110 (20675-20985)
               

               
               2-406, gnl|echTel1|scaffold_298343 (10085-10395)
               

               
               2-406, gnl|galGal2|chr2 (142028463-142028153)
               

               
               2-406, gnl|hg17|chr8 (133969572-133969879)
               

               
               2-406, gnl|Hg17|chr8 (133969601-133970002)
               

               
               2-406, gnl|loxAfr1|scaffold_13505 (26863-27173)
               

               
               2-406, gnl|mm7|chr15 (66767568-66767878)
               

               
               2-406, gnl|Mm7|chr15 (66767597-66768001)
               

               
               2-406, gnl|monDom2|scaffold_3 (17474646-17474336)
               

               
               2-406, gnl|panTro1|chr7 (136915375-136915676)
               

               
               2-406, gnl|rheMac2|chr8 (135450197-135450504)
               

               
               2-406, gnl|rn3|chr7 (104086864-104087174)
               

               
               2-406, gnl|xenTro1|scaffold_976 (48076-48377)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-406, gnl|bosTau2|chr14 (4487756-4488160)
               

               
               2-406, gnl|canFam2|chr13 (32407001-32407311)
               

               
               2-406, gnl|danRer3|chrNA (59711658-59711339)
               

               
               2-406, gnl|dasNov1|scaffold_9110 (20675-20985)
               

               
               2-406, gnl|echTel1|scaffold_298343 (10085-10395)
               

               
               2-406, gnl|galGal2|chr2 (142028463-142028153)
               

               
               2-406, gnl|hg17|chr8 (133969572-133969879)
               

               
               2-406, gnl|Hg17|chr8 (133969601-133970002)
               

               
               2-406, gnl|loxAfr1|scaffold_13505 (26863-27173)
               

               
               2-406, gnl|mm7|chr15 (66767568-66767878)
               

               
               2-406, gnl|Mm7|chr15 (66767597-66768001)
               

               
               2-406, gnl|monDom2|scaffold_3 (17474646-17474336)
               

               
               2-406, gnl|panTro1|chr7 (136915375-136915676)
               

               
               2-406, gnl|rheMac2|chr8 (135450197-135450504)
               

               
               2-406, gnl|rn3|chr7 (104086864-104087174)
               

               
               2-406, gnl|xenTro1|scaffold_976 (48076-48377)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-406, gnl\|bosTau2\|chr14 (4487756-4488160)
	2-406, gnl\|canFam2\|chr13 (32407001-32407311)
	2-406, gnl\|danRer3\|chrNA (59711658-59711339)
	2-406, gnl\|dasNov1\|scaffold_9110 (20675-20985)
	2-406, gnl\|echTel1\|scaffold_298343 (10085-10395)
	2-406, gnl\|galGal2\|chr2 (142028463-142028153)
	2-406, gnl\|hg17\|chr8 (133969572-133969879)
	2-406, gnl\|Hg17\|chr8 (133969601-133970002)
	2-406, gnl\|loxAfr1\|scaffold_13505 (26863-27173)
	2-406, gnl\|mm7\|chr15 (66767568-66767878)
	2-406, gnl\|Mm7\|chr15 (66767597-66768001)
	2-406, gnl\|monDom2\|scaffold_3 (17474646-17474336)
	2-406, gnl\|panTro1\|chr7 (136915375-136915676)
	2-406, gnl\|rheMac2\|chr8 (135450197-135450504)
	2-406, gnl\|rn3\|chr7 (104086864-104087174)
	2-406, gnl\|xenTro1\|scaffold_976 (48076-48377)