Non-Coding RNA Search

rpigcb_8555.y1

Sequence:


               
               GCACGTCTCTGGAGGACATGGAAGGGAGATGCTCTGAAAAGGATGCCCAGCTAGGCCTCT
GTGCACAATCCAATGAGGCCATACCTGCTGCTCCAGGAGAAGGACTTCATGTCAGCTATG
TCATTGGTGGACTCCTCAGTATCCTGCTGATTCTTGTGGTGATTGCAGCTTTCATGTTAT
ACAGACACAAAAAATCCAAGTTAACTGATCCTGGAATGGGGAACCTGACCTACAGCAACC
CTTCCTACCGAACTTCCACTCAGGAAGTGAAAATCGAAGCAGTCCCCAAACCAGCCATGT
ACAATCAACTGTGCTATAAGAAAGAGGGTGGCCCTGACCATAACTACACCAAGGAGAAGG
TCAAGATTGTAGAGGGGATCTGCCTCCTGTCCGGGGAAGACGCTGAGTGGGATGACCTCA
AGCAACTGCGCAGCTCCCGGGGGGGCCTTCTTCGGGATCATGTATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGTCTCTGGAGGACATGGAAGGGAGATGCTCTGAAAAGGATGCCCAGCTAGGCCTCT
GTGCACAATCCAATGAGGCCATACCTGCTGCTCCAGGAGAAGGACTTCATGTCAGCTATG
TCATTGGTGGACTCCTCAGTATCCTGCTGATTCTTGTGGTGATTGCAGCTTTCATGTTAT
ACAGACACAAAAAATCCAAGTTAACTGATCCTGGAATGGGGAACCTGACCTACAGCAACC
CTTCCTACCGAACTTCCACTCAGGAAGTGAAAATCGAAGCAGTCCCCAAACCAGCCATGT
ACAATCAACTGTGCTATAAGAAAGAGGGTGGCCCTGACCATAACTACACCAAGGAGAAGG
TCAAGATTGTAGAGGGGATCTGCCTCCTGTCCGGGGAAGACGCTGAGTGGGATGACCTCA
AGCAACTGCGCAGCTCCCGGGGGGGCCTTCTTCGGGATCATGTATGCAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34783571|gb|AAH41048.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34783571|gb|AAH41048.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               183-301, - strand, RNAz p=0.537415

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               183-301, - strand, RNAz p=0.537415

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               183-327, gnl|bosTau2|chr15 (49419808-49419952)
               

               
               183-327, gnl|canFam2|chr18 (45696527-45696338)
               

               
               183-327, gnl|danRer3|chrUn (94986647-94986495)
               

               
               183-327, gnl|echTel1|scaffold_282623 (83147-83335)
               

               
               183-327, gnl|fr1|chrUn (85357542-85357369)
               

               
               183-327, gnl|galGal2|chr5 (20672454-20672279)
               

               
               183-327, gnl|hg17|chr11 (46840713-46840902)
               

               
               183-327, gnl|Hg17|chr11 (46840876-46840732)
               

               
               183-327, gnl|loxAfr1|scaffold_3036 (25260-25449)
               

               
               183-327, gnl|mm7|chr2 (91359348-91359158)
               

               
               183-327, gnl|Mm7|chr2 (91359183-91359327)
               

               
               183-327, gnl|monDom2|scaffold_33 (12800440-12800620)
               

               
               183-327, gnl|oryCun1|scaffold_173646 (16359-16547)
               

               
               183-327, gnl|panTro1|chr9 (47362072-47362261)
               

               
               183-327, gnl|rheMac2|chr14 (25258270-25258081)
               

               
               183-327, gnl|rn3|chr3 (75766518-75766331)
               

               
               183-327, gnl|tetNig1|chr5 (11791972-11791825)
               

               
               183-327, gnl|xenTro1|scaffold_1009 (67957-68137)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               183-327, gnl|bosTau2|chr15 (49419808-49419952)
               

               
               183-327, gnl|canFam2|chr18 (45696527-45696338)
               

               
               183-327, gnl|danRer3|chrUn (94986647-94986495)
               

               
               183-327, gnl|echTel1|scaffold_282623 (83147-83335)
               

               
               183-327, gnl|fr1|chrUn (85357542-85357369)
               

               
               183-327, gnl|galGal2|chr5 (20672454-20672279)
               

               
               183-327, gnl|hg17|chr11 (46840713-46840902)
               

               
               183-327, gnl|Hg17|chr11 (46840876-46840732)
               

               
               183-327, gnl|loxAfr1|scaffold_3036 (25260-25449)
               

               
               183-327, gnl|mm7|chr2 (91359348-91359158)
               

               
               183-327, gnl|Mm7|chr2 (91359183-91359327)
               

               
               183-327, gnl|monDom2|scaffold_33 (12800440-12800620)
               

               
               183-327, gnl|oryCun1|scaffold_173646 (16359-16547)
               

               
               183-327, gnl|panTro1|chr9 (47362072-47362261)
               

               
               183-327, gnl|rheMac2|chr14 (25258270-25258081)
               

               
               183-327, gnl|rn3|chr3 (75766518-75766331)
               

               
               183-327, gnl|tetNig1|chr5 (11791972-11791825)
               

               
               183-327, gnl|xenTro1|scaffold_1009 (67957-68137)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	183-327, gnl\|bosTau2\|chr15 (49419808-49419952)
	183-327, gnl\|canFam2\|chr18 (45696527-45696338)
	183-327, gnl\|danRer3\|chrUn (94986647-94986495)
	183-327, gnl\|echTel1\|scaffold_282623 (83147-83335)
	183-327, gnl\|fr1\|chrUn (85357542-85357369)
	183-327, gnl\|galGal2\|chr5 (20672454-20672279)
	183-327, gnl\|hg17\|chr11 (46840713-46840902)
	183-327, gnl\|Hg17\|chr11 (46840876-46840732)
	183-327, gnl\|loxAfr1\|scaffold_3036 (25260-25449)
	183-327, gnl\|mm7\|chr2 (91359348-91359158)
	183-327, gnl\|Mm7\|chr2 (91359183-91359327)
	183-327, gnl\|monDom2\|scaffold_33 (12800440-12800620)
	183-327, gnl\|oryCun1\|scaffold_173646 (16359-16547)
	183-327, gnl\|panTro1\|chr9 (47362072-47362261)
	183-327, gnl\|rheMac2\|chr14 (25258270-25258081)
	183-327, gnl\|rn3\|chr3 (75766518-75766331)
	183-327, gnl\|tetNig1\|chr5 (11791972-11791825)
	183-327, gnl\|xenTro1\|scaffold_1009 (67957-68137)