Non-Coding RNA Search

rpigcb_8951.y1

Sequence:


               
               CTTCAGAGTCTGACGGAAAAAGATTATCAGGCGGTGTATTTGAAATGGCACCCTGACAAG
AACCCAGAAAACCATGACCTTGCTAATGAAGTTTTCAAGCATTTGCAGAATGAAATCAAC
AGATTAGAGAAACAGGCTTTTCTGGATCAAAATTCAGACAGAGCCTCAAGGCGCCCATTT
TCAACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAGAGTCTGACGGAAAAAGATTATCAGGCGGTGTATTTGAAATGGCACCCTGACAAG
AACCCAGAAAACCATGACCTTGCTAATGAAGTTTTCAAGCATTTGCAGAATGAAATCAAC
AGATTAGAGAAACAGGCTTTTCTGGATCAAAATTCAGACAGAGCCTCAAGGCGCCCATTT
TCAACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|37926498|pdb|1IUR|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|37926498|pdb|1IUR|A

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               6-186, gnl|bosTau2|chr12 (19490900-19491082)
               

               
               6-186, gnl|canFam2|chr25 (18281944-18281449)
               

               
               6-186, gnl|danRer3|chrNA (220475780-220475288)
               

               
               6-186, gnl|dasNov1|scaffold_6336 (32911-33406)
               

               
               6-186, gnl|echTel1|scaffold_272125 (1903-2401)
               

               
               6-186, gnl|fr1|chrUn (53690017-53689522)
               

               
               6-186, gnl|galGal2|chr1 (169641714-169641222)
               

               
               6-186, gnl|hg17|chr13 (22802596-22803091)
               

               
               6-186, gnl|Hg17|chr13 (22803051-22802869)
               

               
               6-186, gnl|mm7|chr14 (56081609-56081114)
               

               
               6-186, gnl|Mm7|chr14 (56081152-56081334)
               

               
               6-186, gnl|monDom2|scaffold_15 (32188803-32189295)
               

               
               6-186, gnl|oryCun1|scaffold_209438 (39671-40166)
               

               
               6-186, gnl|panTro1|chr14 (21989048-21989543)
               

               
               6-186, gnl|rheMac2|chr17 (3728418-3728913)
               

               
               6-186, gnl|rn3|chr15 (40358747-40358252)
               

               
               6-186, gnl|tetNig1|chrUn_random (13552149-13551651)
               

               
               6-186, gnl|xenTro1|scaffold_417 (559875-560367)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-186, gnl|bosTau2|chr12 (19490900-19491082)
               

               
               6-186, gnl|canFam2|chr25 (18281944-18281449)
               

               
               6-186, gnl|danRer3|chrNA (220475780-220475288)
               

               
               6-186, gnl|dasNov1|scaffold_6336 (32911-33406)
               

               
               6-186, gnl|echTel1|scaffold_272125 (1903-2401)
               

               
               6-186, gnl|fr1|chrUn (53690017-53689522)
               

               
               6-186, gnl|galGal2|chr1 (169641714-169641222)
               

               
               6-186, gnl|hg17|chr13 (22802596-22803091)
               

               
               6-186, gnl|Hg17|chr13 (22803051-22802869)
               

               
               6-186, gnl|mm7|chr14 (56081609-56081114)
               

               
               6-186, gnl|Mm7|chr14 (56081152-56081334)
               

               
               6-186, gnl|monDom2|scaffold_15 (32188803-32189295)
               

               
               6-186, gnl|oryCun1|scaffold_209438 (39671-40166)
               

               
               6-186, gnl|panTro1|chr14 (21989048-21989543)
               

               
               6-186, gnl|rheMac2|chr17 (3728418-3728913)
               

               
               6-186, gnl|rn3|chr15 (40358747-40358252)
               

               
               6-186, gnl|tetNig1|chrUn_random (13552149-13551651)
               

               
               6-186, gnl|xenTro1|scaffold_417 (559875-560367)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	6-186, gnl\|bosTau2\|chr12 (19490900-19491082)
	6-186, gnl\|canFam2\|chr25 (18281944-18281449)
	6-186, gnl\|danRer3\|chrNA (220475780-220475288)
	6-186, gnl\|dasNov1\|scaffold_6336 (32911-33406)
	6-186, gnl\|echTel1\|scaffold_272125 (1903-2401)
	6-186, gnl\|fr1\|chrUn (53690017-53689522)
	6-186, gnl\|galGal2\|chr1 (169641714-169641222)
	6-186, gnl\|hg17\|chr13 (22802596-22803091)
	6-186, gnl\|Hg17\|chr13 (22803051-22802869)
	6-186, gnl\|mm7\|chr14 (56081609-56081114)
	6-186, gnl\|Mm7\|chr14 (56081152-56081334)
	6-186, gnl\|monDom2\|scaffold_15 (32188803-32189295)
	6-186, gnl\|oryCun1\|scaffold_209438 (39671-40166)
	6-186, gnl\|panTro1\|chr14 (21989048-21989543)
	6-186, gnl\|rheMac2\|chr17 (3728418-3728913)
	6-186, gnl\|rn3\|chr15 (40358747-40358252)
	6-186, gnl\|tetNig1\|chrUn_random (13552149-13551651)
	6-186, gnl\|xenTro1\|scaffold_417 (559875-560367)