rpigcb_9047.y1
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTCGCTACGAGCTAGATACGTGGTACCATTCTCCCTATCCTGAAGAATATGCACGACTG GGACGTCTCTACATGTGTGAATTCTGTTTAAAATACATGAAGAGTCAAACAATACTGCGT CGACACATGGCTAAGTGTGTTTGGAAACACCCGCCTGGTGACGAGATATATCGCAAAGGT TCAATCTCTGTGTTTGAAGTGGATGGCAAGAAAAACAAGATCTACTGCCAAAACCTGTGC CTGCTGGCCAAGCTTTTTCTGGACCACAAGACATTATATTATGATGTGGAACCCTTCCTG TTCTATGTTATGACAGAGGCGGACAACACTGGTTGTCACCTGATTGGATATTTTTCCAAG GAAAAGAATTCATTCCTCAACTACAATGTATCCTGTATCCTTACCATGCCTCAGTACATG AGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTCGCTACGAGCTAGATACGTGGTACCATTCTCCCTATCCTGAAGAATATGCACGACTG GGACGTCTCTACATGTGTGAATTCTGTTTAAAATACATGAAGAGTCAAACAATACTGCGT CGACACATGGCTAAGTGTGTTTGGAAACACCCGCCTGGTGACGAGATATATCGCAAAGGT TCAATCTCTGTGTTTGAAGTGGATGGCAAGAAAAACAAGATCTACTGCCAAAACCTGTGC CTGCTGGCCAAGCTTTTTCTGGACCACAAGACATTATATTATGATGTGGAACCCTTCCTG TTCTATGTTATGACAGAGGCGGACAACACTGGTTGTCACCTGATTGGATATTTTTCCAAG GAAAAGAATTCATTCCTCAACTACAATGTATCCTGTATCCTTACCATGCCTCAGTACATG AGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 218-336, + strand, RNAz p=0.531219 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 218-336, + strand, RNAz p=0.531219 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 1-136, gnl|bosTau2|chr19 (29564990-29564856) | |
| 1-136, gnl|canFam2|chr27 (37847658-37847787) | |
| 1-136, gnl|danRer3|chr3 (26938674-26938545) | |
| 1-136, gnl|dasNov1|scaffold_3555 (33181-33052) | |
| 1-136, gnl|echTel1|scaffold_325300 (4508-4613) | |
| 1-136, gnl|fr1|chrUn (91394499-91394628) | |
| 1-136, gnl|galGal2|chrUn (85027690-85027561) | |
| 1-136, gnl|Hg17|chr17 (45250244-45250378) | |
| 1-136, gnl|hg17|chrX (95035153-95035282) | |
| 1-136, gnl|loxAfr1|scaffold_1346 (115546-115419) | |
| 1-136, gnl|mm7|chr11 (95393068-95393197) | |
| 1-136, gnl|Mm7|chr11 (95393196-95393062) | |
| 1-136, gnl|monDom2|scaffold_18 (43813428-43813557) | |
| 1-136, gnl|oryCun1|scaffold_199541 (78977-79106) | |
| 1-136, gnl|panTro1|chrX (98080779-98080908) | |
| 1-136, gnl|rheMac2|chr16 (34060318-34060189) | |
| 1-136, gnl|rn3|chr10 (83983515-83983644) | |
| 1-136, gnl|tetNig1|chr2 (4202314-4202185) | |
| 1-136, gnl|xenTro1|scaffold_1185 (65074-64945) | |
| 185-365, gnl|bosTau2|chr28 (24135096-24134918) | |
| 185-365, gnl|Hg17|chr10 (76414832-76415010) | |
| 185-365, gnl|Mm7|chr14 (19293136-19293315) | |
| 218-361, gnl|bosTau2|chr19 (29559492-29559349) | |
| 218-361, gnl|canFam2|chr27 (37847427-37847568) | |
| 218-361, gnl|canFam2|chr9 (29191521-29191694) | |
| 218-361, gnl|danRer3|chr3 (26939632-26939784) | |
| 218-361, gnl|danRer3|chr3 (26939867-26939636) | |
| 218-361, gnl|dasNov1|scaffold_3555 (35960-36133) | |
| 218-361, gnl|dasNov1|scaffold_3555 (36126-35985) | |
| 218-361, gnl|echTel1|scaffold_162535 (564-736) | |
| 218-361, gnl|echTel1|scaffold_162535 (726-588) | |
| 218-361, gnl|fr1|chrUn (264793514-264793685) | |
| 218-361, gnl|fr1|chrUn (91393873-91394113) | |
| 218-361, gnl|galGal2|chrUn (85028886-85029048) | |
| 218-361, gnl|galGal2|chrUn (85029044-85028903) | |
| 218-361, gnl|hg17|chr17 (45253987-45254160) | |
| 218-361, gnl|Hg17|chr17 (45254009-45254152) | |
| 218-361, gnl|hg17|chrX (95034922-95035063) | |
| 218-361, gnl|loxAfr1|scaffold_15739 (55199-55058) | |
| 218-361, gnl|loxAfr1|scaffold_2557 (54529-54393) | |
| 218-361, gnl|mm7|chr11 (95390704-95390533) | |
| 218-361, gnl|mm7|chr11 (95390540-95390681) | |
| 218-361, gnl|Mm7|chr11 (95390682-95390539) | |
| 218-361, gnl|monDom2|scaffold_18 (43809200-43809030) | |
| 218-361, gnl|monDom2|scaffold_18 (43809044-43809185) | |
| 218-361, gnl|oryCun1|scaffold_199541 (75367-75196) | |
| 218-361, gnl|oryCun1|scaffold_199541 (75203-75344) | |
| 218-361, gnl|panTro1|chr19_random (30862238-30862411) | |
| 218-361, gnl|panTro1|chr19_random (30862404-30862270) | |
| 218-361, gnl|rheMac2|chr16 (34064358-34064531) | |
| 218-361, gnl|rheMac2|chr16 (34064524-34064383) | |
| 218-361, gnl|rn3|chr10 (83981381-83981210) | |
| 218-361, gnl|rn3|chr10 (83981217-83981358) | |
| 218-361, gnl|tetNig1|chr2 (4203086-4203234) | |
| 218-361, gnl|tetNig1|chr2 (4203331-4203090) | |
| 218-361, gnl|xenTro1|scaffold_1185 (65617-65775) | |
| 218-361, gnl|xenTro1|scaffold_1185 (65773-65632) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-136, gnl|bosTau2|chr19 (29564990-29564856) | |
| 1-136, gnl|canFam2|chr27 (37847658-37847787) | |
| 1-136, gnl|danRer3|chr3 (26938674-26938545) | |
| 1-136, gnl|dasNov1|scaffold_3555 (33181-33052) | |
| 1-136, gnl|echTel1|scaffold_325300 (4508-4613) | |
| 1-136, gnl|fr1|chrUn (91394499-91394628) | |
| 1-136, gnl|galGal2|chrUn (85027690-85027561) | |
| 1-136, gnl|Hg17|chr17 (45250244-45250378) | |
| 1-136, gnl|hg17|chrX (95035153-95035282) | |
| 1-136, gnl|loxAfr1|scaffold_1346 (115546-115419) | |
| 1-136, gnl|mm7|chr11 (95393068-95393197) | |
| 1-136, gnl|Mm7|chr11 (95393196-95393062) | |
| 1-136, gnl|monDom2|scaffold_18 (43813428-43813557) | |
| 1-136, gnl|oryCun1|scaffold_199541 (78977-79106) | |
| 1-136, gnl|panTro1|chrX (98080779-98080908) | |
| 1-136, gnl|rheMac2|chr16 (34060318-34060189) | |
| 1-136, gnl|rn3|chr10 (83983515-83983644) | |
| 1-136, gnl|tetNig1|chr2 (4202314-4202185) | |
| 1-136, gnl|xenTro1|scaffold_1185 (65074-64945) | |
| 185-365, gnl|bosTau2|chr28 (24135096-24134918) | |
| 185-365, gnl|Hg17|chr10 (76414832-76415010) | |
| 185-365, gnl|Mm7|chr14 (19293136-19293315) | |
| 218-361, gnl|bosTau2|chr19 (29559492-29559349) | |
| 218-361, gnl|canFam2|chr27 (37847427-37847568) | |
| 218-361, gnl|canFam2|chr9 (29191521-29191694) | |
| 218-361, gnl|danRer3|chr3 (26939632-26939784) | |
| 218-361, gnl|danRer3|chr3 (26939867-26939636) | |
| 218-361, gnl|dasNov1|scaffold_3555 (35960-36133) | |
| 218-361, gnl|dasNov1|scaffold_3555 (36126-35985) | |
| 218-361, gnl|echTel1|scaffold_162535 (564-736) | |
| 218-361, gnl|echTel1|scaffold_162535 (726-588) | |
| 218-361, gnl|fr1|chrUn (264793514-264793685) | |
| 218-361, gnl|fr1|chrUn (91393873-91394113) | |
| 218-361, gnl|galGal2|chrUn (85028886-85029048) | |
| 218-361, gnl|galGal2|chrUn (85029044-85028903) | |
| 218-361, gnl|hg17|chr17 (45253987-45254160) | |
| 218-361, gnl|Hg17|chr17 (45254009-45254152) | |
| 218-361, gnl|hg17|chrX (95034922-95035063) | |
| 218-361, gnl|loxAfr1|scaffold_15739 (55199-55058) | |
| 218-361, gnl|loxAfr1|scaffold_2557 (54529-54393) | |
| 218-361, gnl|mm7|chr11 (95390704-95390533) | |
| 218-361, gnl|mm7|chr11 (95390540-95390681) | |
| 218-361, gnl|Mm7|chr11 (95390682-95390539) | |
| 218-361, gnl|monDom2|scaffold_18 (43809200-43809030) | |
| 218-361, gnl|monDom2|scaffold_18 (43809044-43809185) | |
| 218-361, gnl|oryCun1|scaffold_199541 (75367-75196) | |
| 218-361, gnl|oryCun1|scaffold_199541 (75203-75344) | |
| 218-361, gnl|panTro1|chr19_random (30862238-30862411) | |
| 218-361, gnl|panTro1|chr19_random (30862404-30862270) | |
| 218-361, gnl|rheMac2|chr16 (34064358-34064531) | |
| 218-361, gnl|rheMac2|chr16 (34064524-34064383) | |
| 218-361, gnl|rn3|chr10 (83981381-83981210) | |
| 218-361, gnl|rn3|chr10 (83981217-83981358) | |
| 218-361, gnl|tetNig1|chr2 (4203086-4203234) | |
| 218-361, gnl|tetNig1|chr2 (4203331-4203090) | |
| 218-361, gnl|xenTro1|scaffold_1185 (65617-65775) | |
| 218-361, gnl|xenTro1|scaffold_1185 (65773-65632) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |