Non-Coding RNA Search

rpigcb_9629.y1

Sequence:


               
               CTCCGGGCCTGGCCGGGAACCCGGAGGCGCGGCCAGCATGGAGGCGCTGCTGCTGGGCGT
GGGGCTGCTGCTGGGCGCCTACGTGCTTGTCTACTACAACCTGGTGAAGGCCCCGCCGTG
CCGCGGCATCGCCAGCCTGCGGGGCCGCACGGCCGTGGTCACGGGCGCCAATAGCGGCAT
CGGGAAGATGACGGCGCTGGAGCTGGCGCGCCGGGGAGCGCGCGTGGTGCTGGCCTGCCG
GAGCCGGGAGCGCGGCGAGGCGGCCGCCTTCGACCTCCGCCAGGAAAGTGGGAACAATGA
GGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCGGGCCTGGCCGGGAACCCGGAGGCGCGGCCAGCATGGAGGCGCTGCTGCTGGGCGT
GGGGCTGCTGCTGGGCGCCTACGTGCTTGTCTACTACAACCTGGTGAAGGCCCCGCCGTG
CCGCGGCATCGCCAGCCTGCGGGGCCGCACGGCCGTGGTCACGGGCGCCAATAGCGGCAT
CGGGAAGATGACGGCGCTGGAGCTGGCGCGCCGGGGAGCGCGCGTGGTGCTGGCCTGCCG
GAGCCGGGAGCGCGGCGAGGCGGCCGCCTTCGACCTCCGCCAGGAAAGTGGGAACAATGA
GGTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5SS84_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5SS84_MOUSE

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-165, gnl|bosTau2|chr19 (13817001-13816837)
               

               
               1-165, gnl|canFam2|chr9 (46397076-46397246)
               

               
               1-165, gnl|dasNov1|scaffold_55552 (10306-10476)
               

               
               1-165, gnl|fr1|chrUn (302964223-302964048)
               

               
               1-165, gnl|hg17|chr17 (24253933-24254120)
               

               
               1-165, gnl|Hg17|chr17 (24254125-24253961)
               

               
               1-165, gnl|mm7|chr11 (78114082-78113925)
               

               
               1-165, gnl|Mm7|chr11 (78113916-78114074)
               

               
               1-165, gnl|monDom2|scaffold_44 (14834219-14834444)
               

               
               1-165, gnl|oryCun1|scaffold_211733 (41487-41322)
               

               
               1-165, gnl|rheMac2|chr16 (24119396-24119583)
               

               
               1-165, gnl|rn3|chr10 (64090095-64089890)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-165, gnl|bosTau2|chr19 (13817001-13816837)
               

               
               1-165, gnl|canFam2|chr9 (46397076-46397246)
               

               
               1-165, gnl|dasNov1|scaffold_55552 (10306-10476)
               

               
               1-165, gnl|fr1|chrUn (302964223-302964048)
               

               
               1-165, gnl|hg17|chr17 (24253933-24254120)
               

               
               1-165, gnl|Hg17|chr17 (24254125-24253961)
               

               
               1-165, gnl|mm7|chr11 (78114082-78113925)
               

               
               1-165, gnl|Mm7|chr11 (78113916-78114074)
               

               
               1-165, gnl|monDom2|scaffold_44 (14834219-14834444)
               

               
               1-165, gnl|oryCun1|scaffold_211733 (41487-41322)
               

               
               1-165, gnl|rheMac2|chr16 (24119396-24119583)
               

               
               1-165, gnl|rn3|chr10 (64090095-64089890)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-165, gnl\|bosTau2\|chr19 (13817001-13816837)
	1-165, gnl\|canFam2\|chr9 (46397076-46397246)
	1-165, gnl\|dasNov1\|scaffold_55552 (10306-10476)
	1-165, gnl\|fr1\|chrUn (302964223-302964048)
	1-165, gnl\|hg17\|chr17 (24253933-24254120)
	1-165, gnl\|Hg17\|chr17 (24254125-24253961)
	1-165, gnl\|mm7\|chr11 (78114082-78113925)
	1-165, gnl\|Mm7\|chr11 (78113916-78114074)
	1-165, gnl\|monDom2\|scaffold_44 (14834219-14834444)
	1-165, gnl\|oryCun1\|scaffold_211733 (41487-41322)
	1-165, gnl\|rheMac2\|chr16 (24119396-24119583)
	1-165, gnl\|rn3\|chr10 (64090095-64089890)