Non-Coding RNA Search

rpigcb_9745.y1

Sequence:


               
               CAACATTCAGAACATATCAGTGACTGAAGAAGCTCTAATAGATTTGCAGGCTATCTCTCC
AGGAAGAAAACCTGCCAGTGTCACTGCCCCATTGAAAGGTGCAAATCACGCTGGGCTTGT
GGAAACAAGGATTAGGACACAATCTCAGGAGTCTTGGTACCAGGGCACAGAGACCTCAAC
CAAATAGCCCTAGGGAATTTAAACAATTATTTTCATCAGTTACTGGATTTCTTTTCAAAA
CCTTCACATGCCAAGGAGGAAAAAAAAAATAGAGAGATTGTTTATGATCTTTGGTCCTTT
TTTTTTTTAACCTTGAAGCTGAGTGAACAAAAACAATGGAGCTCACCCCAGAAGAATGTG
GAGAGTCACATTTGGTGTTTCACCCAAGTGTATCGGCTGTTGGGGAATGAAGGAGGAAAT
ATATCATGGAGTGGTATTGACCAGTGTGGGTTTACTGAGAATTTGGCCAGGTTCAAAGGA
CATTTGACATACATGGCTTGCCACCCTCTTCTAGGACCAGGATAAAAGAACCACAAATAT
CTCATCATTTCATTGAACCTTGGTCTCCTCATCTGGAAAATGGGGTGACAAAGACCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAACATTCAGAACATATCAGTGACTGAAGAAGCTCTAATAGATTTGCAGGCTATCTCTCC
AGGAAGAAAACCTGCCAGTGTCACTGCCCCATTGAAAGGTGCAAATCACGCTGGGCTTGT
GGAAACAAGGATTAGGACACAATCTCAGGAGTCTTGGTACCAGGGCACAGAGACCTCAAC
CAAATAGCCCTAGGGAATTTAAACAATTATTTTCATCAGTTACTGGATTTCTTTTCAAAA
CCTTCACATGCCAAGGAGGAAAAAAAAAATAGAGAGATTGTTTATGATCTTTGGTCCTTT
TTTTTTTTAACCTTGAAGCTGAGTGAACAAAAACAATGGAGCTCACCCCAGAAGAATGTG
GAGAGTCACATTTGGTGTTTCACCCAAGTGTATCGGCTGTTGGGGAATGAAGGAGGAAAT
ATATCATGGAGTGGTATTGACCAGTGTGGGTTTACTGAGAATTTGGCCAGGTTCAAAGGA
CATTTGACATACATGGCTTGCCACCCTCTTCTAGGACCAGGATAAAAGAACCACAAATAT
CTCATCATTTCATTGAACCTTGGTCTCCTCATCTGGAAAATGGGGTGACAAAGACCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               105-203, + strand, RNAz p=0.915867

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               105-203, + strand, RNAz p=0.915867

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               66-599, gnl|bosTau2|chr1 (45426861-45427385)
               

               
               66-599, gnl|Hg17|chr3 (195379355-195378809)
               

               
               66-599, gnl|Mm7|chr16 (29772642-29772170)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-599, gnl|bosTau2|chr1 (45426861-45427385)
               

               
               66-599, gnl|Hg17|chr3 (195379355-195378809)
               

               
               66-599, gnl|Mm7|chr16 (29772642-29772170)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	66-599, gnl\|bosTau2\|chr1 (45426861-45427385)
	66-599, gnl\|Hg17\|chr3 (195379355-195378809)
	66-599, gnl\|Mm7\|chr16 (29772642-29772170)