Non-Coding RNA Search

rpigcb_9871.y1

Sequence:


               
               TTTGCTTCTGCTTACCTCCCAGCTTTGGAAAGAAAAGACGAAGAAAGGTCTGTGCTGATT
TGCATCTGGGGGATCCTTCCCCGTCCTGAGCTTCCGGGTGCAGAAAAAGTGATTTGACCT
CGGATTGTCTCCAGAAGAAGGGACAGAAAGAGCCTAGAACATTCCCCCAGATGTTCCAGC
TGTGACTTCTCCACCACCCCTCGATGGGACCGCTGGAAAAGCCATCCACTGGCTGGAAAC
ACAAGGAAGCGGAGATGCAAGTTGGTCCCCAGCCTGATGAGAAGATCAGGGTGGGGAGGC
CTGGAGACAGGAGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTTCTGCTTACCTCCCAGCTTTGGAAAGAAAAGACGAAGAAAGGTCTGTGCTGATT
TGCATCTGGGGGATCCTTCCCCGTCCTGAGCTTCCGGGTGCAGAAAAAGTGATTTGACCT
CGGATTGTCTCCAGAAGAAGGGACAGAAAGAGCCTAGAACATTCCCCCAGATGTTCCAGC
TGTGACTTCTCCACCACCCCTCGATGGGACCGCTGGAAAAGCCATCCACTGGCTGGAAAC
ACAAGGAAGCGGAGATGCAAGTTGGTCCCCAGCCTGATGAGAAGATCAGGGTGGGGAGGC
CTGGAGACAGGAGCG

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-170, gnl|bosTau2|chr25 (31274037-31273870)
               

               
               1-170, gnl|canFam2|chr6 (10567775-10567987)
               

               
               1-170, gnl|dasNov1|scaffold_44333 (8456-8653)
               

               
               1-170, gnl|echTel1|scaffold_303261 (2520-2718)
               

               
               1-170, gnl|hg17|chr7 (75683260-75683507)
               

               
               1-170, gnl|Hg17|chr7 (75683548-75683382)
               

               
               1-170, gnl|loxAfr1|scaffold_7176 (67913-68096)
               

               
               1-170, gnl|mm7|chr5 (134945473-134945657)
               

               
               1-170, gnl|Mm7|chr5 (134945698-134945542)
               

               
               1-170, gnl|panTro1|chr6 (76784110-76784345)
               

               
               1-170, gnl|rheMac2|chr3 (49963680-49963435)
               

               
               1-170, gnl|rn3|chr12 (21805396-21805208)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-170, gnl|bosTau2|chr25 (31274037-31273870)
               

               
               1-170, gnl|canFam2|chr6 (10567775-10567987)
               

               
               1-170, gnl|dasNov1|scaffold_44333 (8456-8653)
               

               
               1-170, gnl|echTel1|scaffold_303261 (2520-2718)
               

               
               1-170, gnl|hg17|chr7 (75683260-75683507)
               

               
               1-170, gnl|Hg17|chr7 (75683548-75683382)
               

               
               1-170, gnl|loxAfr1|scaffold_7176 (67913-68096)
               

               
               1-170, gnl|mm7|chr5 (134945473-134945657)
               

               
               1-170, gnl|Mm7|chr5 (134945698-134945542)
               

               
               1-170, gnl|panTro1|chr6 (76784110-76784345)
               

               
               1-170, gnl|rheMac2|chr3 (49963680-49963435)
               

               
               1-170, gnl|rn3|chr12 (21805396-21805208)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-170, gnl\|bosTau2\|chr25 (31274037-31273870)
	1-170, gnl\|canFam2\|chr6 (10567775-10567987)
	1-170, gnl\|dasNov1\|scaffold_44333 (8456-8653)
	1-170, gnl\|echTel1\|scaffold_303261 (2520-2718)
	1-170, gnl\|hg17\|chr7 (75683260-75683507)
	1-170, gnl\|Hg17\|chr7 (75683548-75683382)
	1-170, gnl\|loxAfr1\|scaffold_7176 (67913-68096)
	1-170, gnl\|mm7\|chr5 (134945473-134945657)
	1-170, gnl\|Mm7\|chr5 (134945698-134945542)
	1-170, gnl\|panTro1\|chr6 (76784110-76784345)
	1-170, gnl\|rheMac2\|chr3 (49963680-49963435)
	1-170, gnl\|rn3\|chr12 (21805396-21805208)