Non-Coding RNA Search

rpigcf0_000631.y1

Sequence:


               
               TTGCAGACATCGAACCACAAATGTCTCAGAGAAAAGTTTACCTGGGCTCTCCCAATGAGT
AGTCTGGAATTAGCTTTCCTGATTCCAAATTCCACTCCTTTTCTTTTATAACATTTTTAA
TTCTTTAATAATGATTTCTACCTTAGTATAAACAGACTACAATCCCAACAGCAAAAGACA
GAGTTCGCTAAGTCTATGATAACACAAGAAGGCAGATGAATGGATGAAAAAAGTTATGGT
AGGCACAGAATATTAGCCATAAAAATGAATTAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCAGACATCGAACCACAAATGTCTCAGAGAAAAGTTTACCTGGGCTCTCCCAATGAGT
AGTCTGGAATTAGCTTTCCTGATTCCAAATTCCACTCCTTTTCTTTTATAACATTTTTAA
TTCTTTAATAATGATTTCTACCTTAGTATAAACAGACTACAATCCCAACAGCAAAAGACA
GAGTTCGCTAAGTCTATGATAACACAAGAAGGCAGATGAATGGATGAAAAAAGTTATGGT
AGGCACAGAATATTAGCCATAAAAATGAATTAAAT

Aligned organism(s): 10 entry(ies)

More info

Aligned organism(s): 10 entry(ies)

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               1-229, gnl|bosTau2|chr6 (51485472-51485700)
               

               
               1-229, gnl|canFam2|chr32 (6640698-6640919)
               

               
               1-229, gnl|dasNov1|scaffold_43509 (3078-3293)
               

               
               1-229, gnl|hg17|chr4 (80640144-80640358)
               

               
               1-229, gnl|mm7|chr5 (96626267-96626486)
               

               
               1-229, gnl|Mm7|chr5 (96626429-96626231)
               

               
               1-229, gnl|oryCun1|scaffold_190424 (42648-42453)
               

               
               1-229, gnl|panTro1|chr3 (53085970-53085756)
               

               
               1-229, gnl|rheMac2|chr5 (50221050-50220836)
               

               
               1-229, gnl|rn3|chr14 (13598780-13598554)

Aligned organism(s): 10 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-229, gnl|bosTau2|chr6 (51485472-51485700)
               

               
               1-229, gnl|canFam2|chr32 (6640698-6640919)
               

               
               1-229, gnl|dasNov1|scaffold_43509 (3078-3293)
               

               
               1-229, gnl|hg17|chr4 (80640144-80640358)
               

               
               1-229, gnl|mm7|chr5 (96626267-96626486)
               

               
               1-229, gnl|Mm7|chr5 (96626429-96626231)
               

               
               1-229, gnl|oryCun1|scaffold_190424 (42648-42453)
               

               
               1-229, gnl|panTro1|chr3 (53085970-53085756)
               

               
               1-229, gnl|rheMac2|chr5 (50221050-50220836)
               

               
               1-229, gnl|rn3|chr14 (13598780-13598554)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-229, gnl\|bosTau2\|chr6 (51485472-51485700)
	1-229, gnl\|canFam2\|chr32 (6640698-6640919)
	1-229, gnl\|dasNov1\|scaffold_43509 (3078-3293)
	1-229, gnl\|hg17\|chr4 (80640144-80640358)
	1-229, gnl\|mm7\|chr5 (96626267-96626486)
	1-229, gnl\|Mm7\|chr5 (96626429-96626231)
	1-229, gnl\|oryCun1\|scaffold_190424 (42648-42453)
	1-229, gnl\|panTro1\|chr3 (53085970-53085756)
	1-229, gnl\|rheMac2\|chr5 (50221050-50220836)
	1-229, gnl\|rn3\|chr14 (13598780-13598554)