Non-Coding RNA Search

rpigcf0_000652.y1

Sequence:


               
               AACAAAATGGCAGTAGATGCCTCTGTGAAAATTTCCTAAAAATTAAATATGGATAAAGGA
TCTTGGTTAATGTAGATACCGGAGGTGTTTTGGTTTTAAAGTGCTACAAGCATTAATATT
CATTACAGAAATAAGATTTGATAACCCGAAAAAGAACATGAACAAAGCTTTGGTGATAAG
AGGAAATTATCTTCTCAATGTTCAAAGAATATTTTGCTCTCCATTTTCACAAGTTAGAGT
TGACACTAAAAGTTATGTTCCCTTCAGACTCTGGATTTTCTTCTGTAAAAGCACTCTTTT
CATAGCTGGATTCTTGTGTTTTTATTTTGGCGATTACAATATAATTGATTCTAGTGAAAT
GCGTATCACAGACATTATTATTGATAGCTGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACAAAATGGCAGTAGATGCCTCTGTGAAAATTTCCTAAAAATTAAATATGGATAAAGGA
TCTTGGTTAATGTAGATACCGGAGGTGTTTTGGTTTTAAAGTGCTACAAGCATTAATATT
CATTACAGAAATAAGATTTGATAACCCGAAAAAGAACATGAACAAAGCTTTGGTGATAAG
AGGAAATTATCTTCTCAATGTTCAAAGAATATTTTGCTCTCCATTTTCACAAGTTAGAGT
TGACACTAAAAGTTATGTTCCCTTCAGACTCTGGATTTTCTTCTGTAAAAGCACTCTTTT
CATAGCTGGATTCTTGTGTTTTTATTTTGGCGATTACAATATAATTGATTCTAGTGAAAT
GCGTATCACAGACATTATTATTGATAGCTGGA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

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               1-392, gnl|bosTau2|chr8 (9383178-9383567)
               

               
               1-392, gnl|canFam2|chr11 (49237853-49238869)
               

               
               1-392, gnl|dasNov1|scaffold_176858 (1160-126)
               

               
               1-392, gnl|echTel1|scaffold_323805 (1118-113)
               

               
               1-392, gnl|hg17|chr9 (28167974-28168987)
               

               
               1-392, gnl|Hg17|chr9 (28168398-28168791)
               

               
               1-392, gnl|loxAfr1|scaffold_1044 (29910-30942)
               

               
               1-392, gnl|mm7|chr4 (36074776-36075786)
               

               
               1-392, gnl|Mm7|chr4 (36075220-36075597)
               

               
               1-392, gnl|monDom2|scaffold_19 (26366723-26367681)
               

               
               1-392, gnl|oryCun1|scaffold_157108 (8259-7243)
               

               
               1-392, gnl|panTro1|chr11 (28676648-28677660)
               

               
               1-392, gnl|rheMac2|chr15 (48946908-48945889)
               

               
               1-392, gnl|rn3|chr5 (52690259-52691250)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-392, gnl|bosTau2|chr8 (9383178-9383567)
               

               
               1-392, gnl|canFam2|chr11 (49237853-49238869)
               

               
               1-392, gnl|dasNov1|scaffold_176858 (1160-126)
               

               
               1-392, gnl|echTel1|scaffold_323805 (1118-113)
               

               
               1-392, gnl|hg17|chr9 (28167974-28168987)
               

               
               1-392, gnl|Hg17|chr9 (28168398-28168791)
               

               
               1-392, gnl|loxAfr1|scaffold_1044 (29910-30942)
               

               
               1-392, gnl|mm7|chr4 (36074776-36075786)
               

               
               1-392, gnl|Mm7|chr4 (36075220-36075597)
               

               
               1-392, gnl|monDom2|scaffold_19 (26366723-26367681)
               

               
               1-392, gnl|oryCun1|scaffold_157108 (8259-7243)
               

               
               1-392, gnl|panTro1|chr11 (28676648-28677660)
               

               
               1-392, gnl|rheMac2|chr15 (48946908-48945889)
               

               
               1-392, gnl|rn3|chr5 (52690259-52691250)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-392, gnl\|bosTau2\|chr8 (9383178-9383567)
	1-392, gnl\|canFam2\|chr11 (49237853-49238869)
	1-392, gnl\|dasNov1\|scaffold_176858 (1160-126)
	1-392, gnl\|echTel1\|scaffold_323805 (1118-113)
	1-392, gnl\|hg17\|chr9 (28167974-28168987)
	1-392, gnl\|Hg17\|chr9 (28168398-28168791)
	1-392, gnl\|loxAfr1\|scaffold_1044 (29910-30942)
	1-392, gnl\|mm7\|chr4 (36074776-36075786)
	1-392, gnl\|Mm7\|chr4 (36075220-36075597)
	1-392, gnl\|monDom2\|scaffold_19 (26366723-26367681)
	1-392, gnl\|oryCun1\|scaffold_157108 (8259-7243)
	1-392, gnl\|panTro1\|chr11 (28676648-28677660)
	1-392, gnl\|rheMac2\|chr15 (48946908-48945889)
	1-392, gnl\|rn3\|chr5 (52690259-52691250)