Non-Coding RNA Search

rpigcf0_000694.y1

Sequence:


               
               GTCTCAGTACGATCTTGCTTACTCTGGAGAACTGGTGAGCTGTGTACTCTTCTTTATAGA
AATAGCTTTTACTTTTCCCTGAATAGGTTAAGCTTGTTTCTGTGTTCAGTGATGCTACAT
GATTAGAGAGACACCCACCCACGAGATGAGAATCAGACTTATCATTGGCAGTCAGAATTA
TTTCCCAAGTCACTCTTATGAATGGGAGTTTTGTTGGCAAAGAGCCAGTCCTCTTTTGCA
GGGCTGTAAAGACAACACAGATTACATAGTTTAGCCAAATTATATACGGATTCCCCCAGT
TCAGTCTATCTTTATAGACTGACGCAGGGCCATTTGGACCTCTTGCAGCTTTCTCTGATC
ACTCCAACCAATTGTTTTTAAACTCACAGCAATTATTTGTACTAGTAATCAGACACAATC
AAATTCTTTTGTTATCTAAGTGTTCGCTGTTATCATGACTTGGTCATTAAGAGGAGTTTT
AACTCAGTGCCATGAAAGGATCCATGTTTCCCCAGTGAGACCATGAGCTCTCCAACTGTA
GAGACTCTACTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCAGTACGATCTTGCTTACTCTGGAGAACTGGTGAGCTGTGTACTCTTCTTTATAGA
AATAGCTTTTACTTTTCCCTGAATAGGTTAAGCTTGTTTCTGTGTTCAGTGATGCTACAT
GATTAGAGAGACACCCACCCACGAGATGAGAATCAGACTTATCATTGGCAGTCAGAATTA
TTTCCCAAGTCACTCTTATGAATGGGAGTTTTGTTGGCAAAGAGCCAGTCCTCTTTTGCA
GGGCTGTAAAGACAACACAGATTACATAGTTTAGCCAAATTATATACGGATTCCCCCAGT
TCAGTCTATCTTTATAGACTGACGCAGGGCCATTTGGACCTCTTGCAGCTTTCTCTGATC
ACTCCAACCAATTGTTTTTAAACTCACAGCAATTATTTGTACTAGTAATCAGACACAATC
AAATTCTTTTGTTATCTAAGTGTTCGCTGTTATCATGACTTGGTCATTAAGAGGAGTTTT
AACTCAGTGCCATGAAAGGATCCATGTTTCCCCAGTGAGACCATGAGCTCTCCAACTGTA
GAGACTCTACTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               118-234, - strand, RNAz p=0.953954

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               118-234, - strand, RNAz p=0.953954

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-354, gnl|bosTau2|chr23 (8701085-8701438)
               

               
               1-354, gnl|Hg17|chr6 (37236988-37236642)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-354, gnl|bosTau2|chr23 (8701085-8701438)
               

               
               1-354, gnl|Hg17|chr6 (37236988-37236642)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-354, gnl\|bosTau2\|chr23 (8701085-8701438)
	1-354, gnl\|Hg17\|chr6 (37236988-37236642)