Non-Coding RNA Search

rpigcf0_001016.y1

Sequence:


               
               ATTATGAAGTAAAGAATGAAGTCTGAATGTGAGACAAGCATCCTTATAATGTGCCTTCTA
ATACATCCATTGCTTTTCTGTCCATACATTCAGCATAAATTTTATCAAGTGGCCATGGAT
CAGTACTTACTTTTCTTTCTCCCAATCCTCACTCTAACAGGCAGCGTTTGAGAAATGACC
CACAATTTATGATGCTTTATCAATGTTTCTACGCACTATGGAGGAAAGGGTGAGGAACAT
ATTTCATGATGAAGTGGGTTTCTAGTTAACAGGACAAAATGAAAGCGAAGTCATAGATCA
GTGTAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTATGAAGTAAAGAATGAAGTCTGAATGTGAGACAAGCATCCTTATAATGTGCCTTCTA
ATACATCCATTGCTTTTCTGTCCATACATTCAGCATAAATTTTATCAAGTGGCCATGGAT
CAGTACTTACTTTTCTTTCTCCCAATCCTCACTCTAACAGGCAGCGTTTGAGAAATGACC
CACAATTTATGATGCTTTATCAATGTTTCTACGCACTATGGAGGAAAGGGTGAGGAACAT
ATTTCATGATGAAGTGGGTTTCTAGTTAACAGGACAAAATGAAAGCGAAGTCATAGATCA
GTGTAATA

Aligned organism(s): 14 entry(ies)

More info

Aligned organism(s): 14 entry(ies)

Help | Less info


               
               1-308, gnl|bosTau2|chr6 (55396678-55396984)
               

               
               1-308, gnl|canFam2|chr32 (11142614-11143007)
               

               
               1-308, gnl|dasNov1|scaffold_4435 (58670-59065)
               

               
               1-308, gnl|echTel1|scaffold_298193 (4535-4923)
               

               
               1-308, gnl|galGal2|chr4 (47365879-47366302)
               

               
               1-308, gnl|hg17|chr4 (85716011-85716406)
               

               
               1-308, gnl|Hg17|chr4 (85716458-85716151)
               

               
               1-308, gnl|loxAfr1|scaffold_220656 (532-140)
               

               
               1-308, gnl|mm7|chr5 (100812833-100813227)
               

               
               1-308, gnl|Mm7|chr5 (100813279-100812972)
               

               
               1-308, gnl|monDom2|scaffold_37 (18282192-18282583)
               

               
               1-308, gnl|panTro1|chr3 (47966065-47965670)
               

               
               1-308, gnl|rheMac2|chr5 (45104153-45103758)
               

               
               1-308, gnl|rn3|chr14 (9277565-9277171)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr6 (55396678-55396984)
               

               
               1-308, gnl|canFam2|chr32 (11142614-11143007)
               

               
               1-308, gnl|dasNov1|scaffold_4435 (58670-59065)
               

               
               1-308, gnl|echTel1|scaffold_298193 (4535-4923)
               

               
               1-308, gnl|galGal2|chr4 (47365879-47366302)
               

               
               1-308, gnl|hg17|chr4 (85716011-85716406)
               

               
               1-308, gnl|Hg17|chr4 (85716458-85716151)
               

               
               1-308, gnl|loxAfr1|scaffold_220656 (532-140)
               

               
               1-308, gnl|mm7|chr5 (100812833-100813227)
               

               
               1-308, gnl|Mm7|chr5 (100813279-100812972)
               

               
               1-308, gnl|monDom2|scaffold_37 (18282192-18282583)
               

               
               1-308, gnl|panTro1|chr3 (47966065-47965670)
               

               
               1-308, gnl|rheMac2|chr5 (45104153-45103758)
               

               
               1-308, gnl|rn3|chr14 (9277565-9277171)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-308, gnl\|bosTau2\|chr6 (55396678-55396984)
	1-308, gnl\|canFam2\|chr32 (11142614-11143007)
	1-308, gnl\|dasNov1\|scaffold_4435 (58670-59065)
	1-308, gnl\|echTel1\|scaffold_298193 (4535-4923)
	1-308, gnl\|galGal2\|chr4 (47365879-47366302)
	1-308, gnl\|hg17\|chr4 (85716011-85716406)
	1-308, gnl\|Hg17\|chr4 (85716458-85716151)
	1-308, gnl\|loxAfr1\|scaffold_220656 (532-140)
	1-308, gnl\|mm7\|chr5 (100812833-100813227)
	1-308, gnl\|Mm7\|chr5 (100813279-100812972)
	1-308, gnl\|monDom2\|scaffold_37 (18282192-18282583)
	1-308, gnl\|panTro1\|chr3 (47966065-47965670)
	1-308, gnl\|rheMac2\|chr5 (45104153-45103758)
	1-308, gnl\|rn3\|chr14 (9277565-9277171)