Non-Coding RNA Search

rpigcf0_001314.y1

Sequence:


               
               AACCACTAAGCCACGACGAGAACTCAAAAAAAAAAGTTTTTAAGTATATAAAATCTATAA
GCCAATATGTTATAGTTACCAAAGTATTTTTACATTTCTAATCTAGTAATAAACATGCTT
TACAAATGCATTAAATAAGTTTTTTCAAATAATAACAAAGAATAATGAGCGTAAATATTT
TAAGATATCTGCAAAAACTTCAGTAAGATATGAAACATTTCTCTTTTCGCATCCACTGAA
ATTTCAAGAATTTTTAATTCTTTTCAATTCCAGATTTCAACTAGAATCTAGAGAAAATAA
ACAGGCAATTTTTTTTCCCCTCAACCAAGTTCATGGACTTCCTCAATTCCAACTAGGGAT
CCAGATTAAGAACTCTGGGCTTAGGCGAAAGTAAGTGCAAAAATAAATTTGGGAGTCACT
AACTTGTGTTCCAGAAGCCAGACTTCAGACTTTAGTCCCCACATTATTTACACTTGAATG
ACCTTAGACATCAAACTTCTGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCACTAAGCCACGACGAGAACTCAAAAAAAAAAGTTTTTAAGTATATAAAATCTATAA
GCCAATATGTTATAGTTACCAAAGTATTTTTACATTTCTAATCTAGTAATAAACATGCTT
TACAAATGCATTAAATAAGTTTTTTCAAATAATAACAAAGAATAATGAGCGTAAATATTT
TAAGATATCTGCAAAAACTTCAGTAAGATATGAAACATTTCTCTTTTCGCATCCACTGAA
ATTTCAAGAATTTTTAATTCTTTTCAATTCCAGATTTCAACTAGAATCTAGAGAAAATAA
ACAGGCAATTTTTTTTCCCCTCAACCAAGTTCATGGACTTCCTCAATTCCAACTAGGGAT
CCAGATTAAGAACTCTGGGCTTAGGCGAAAGTAAGTGCAAAAATAAATTTGGGAGTCACT
AACTTGTGTTCCAGAAGCCAGACTTCAGACTTTAGTCCCCACATTATTTACACTTGAATG
ACCTTAGACATCAAACTTCTGAGCT

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               37-505, gnl|bosTau2|chr5 (22819095-22819554)
               

               
               37-505, gnl|canFam2|chr27 (7327577-7327290)
               

               
               37-505, gnl|dasNov1|scaffold_209909 (92-394)
               

               
               37-505, gnl|echTel1|scaffold_42621 (1525-1214)
               

               
               37-505, gnl|hg17|chr12 (49083130-49083453)
               

               
               37-505, gnl|Hg17|chr12 (49083613-49083128)
               

               
               37-505, gnl|oryCun1|scaffold_187632 (5910-6227)
               

               
               37-505, gnl|panTro1|chr10 (50274567-50274899)
               

               
               37-505, gnl|rheMac2|chr11 (47544338-47544657)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-505, gnl|bosTau2|chr5 (22819095-22819554)
               

               
               37-505, gnl|canFam2|chr27 (7327577-7327290)
               

               
               37-505, gnl|dasNov1|scaffold_209909 (92-394)
               

               
               37-505, gnl|echTel1|scaffold_42621 (1525-1214)
               

               
               37-505, gnl|hg17|chr12 (49083130-49083453)
               

               
               37-505, gnl|Hg17|chr12 (49083613-49083128)
               

               
               37-505, gnl|oryCun1|scaffold_187632 (5910-6227)
               

               
               37-505, gnl|panTro1|chr10 (50274567-50274899)
               

               
               37-505, gnl|rheMac2|chr11 (47544338-47544657)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	37-505, gnl\|bosTau2\|chr5 (22819095-22819554)
	37-505, gnl\|canFam2\|chr27 (7327577-7327290)
	37-505, gnl\|dasNov1\|scaffold_209909 (92-394)
	37-505, gnl\|echTel1\|scaffold_42621 (1525-1214)
	37-505, gnl\|hg17\|chr12 (49083130-49083453)
	37-505, gnl\|Hg17\|chr12 (49083613-49083128)
	37-505, gnl\|oryCun1\|scaffold_187632 (5910-6227)
	37-505, gnl\|panTro1\|chr10 (50274567-50274899)
	37-505, gnl\|rheMac2\|chr11 (47544338-47544657)