Non-Coding RNA Search

rpigcf0_001322.y1

Sequence:


               
               TAAGGCATCATTACCCTCCAAATTATACAGACTTATGTCATTTCATTGAAACACTCATTC
ACCCATCACATGCCCAGATCCAACAGTAACACTTTTGTTTTACAATTATGCCAAAATGAG
CAAACTTGAAATTCTTTCACCTATATTTGAGTACTCTGCAAAATGTCTTTAATCATCTCA
AATAAATTCCAACCAAAAAAAAAAAAAAAAAAGATCTACCATTTCAATGCAAAATATATA
AACCAAAGAAATCATAGCAGAGGTCTCTTCGTACCCTCTGCATTATTCTATGAAGCTTCC
TACAAAGTAGTCGCCAGTAGGGTGGACTGGGTATCAAAAACAGCCTACTATGCAGGCTTC
CCACACAGTAATTTACATATTTACATGTAATTTCCATTAGAACAATAATTTAAGGGAGGG
AGGCACTTGTAGAAGCCAGGATGAAAGAACTGTGCAAAATGCAAAGCTAATTCCATCAAG
GGATTCTGATGATAGGATATCAGTTAAGTAGATTATCATCAACAAAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TAAGGCATCATTACCCTCCAAATTATACAGACTTATGTCATTTCATTGAAACACTCATTC
ACCCATCACATGCCCAGATCCAACAGTAACACTTTTGTTTTACAATTATGCCAAAATGAG
CAAACTTGAAATTCTTTCACCTATATTTGAGTACTCTGCAAAATGTCTTTAATCATCTCA
AATAAATTCCAACCAAAAAAAAAAAAAAAAAAGATCTACCATTTCAATGCAAAATATATA
AACCAAAGAAATCATAGCAGAGGTCTCTTCGTACCCTCTGCATTATTCTATGAAGCTTCC
TACAAAGTAGTCGCCAGTAGGGTGGACTGGGTATCAAAAACAGCCTACTATGCAGGCTTC
CCACACAGTAATTTACATATTTACATGTAATTTCCATTAGAACAATAATTTAAGGGAGGG
AGGCACTTGTAGAAGCCAGGATGAAAGAACTGTGCAAAATGCAAAGCTAATTCCATCAAG
GGATTCTGATGATAGGATATCAGTTAAGTAGATTATCATCAACAAAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               413-529, + strand, RNAz p=0.625479

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               413-529, + strand, RNAz p=0.625479

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-529, gnl|bosTau2|chr3 (57344626-57345162)
               

               
               1-529, gnl|Hg17|chr1 (61301270-61300739)
               

               
               1-529, gnl|Mm7|chr4 (97209573-97209055)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr3 (57344626-57345162)
               

               
               1-529, gnl|Hg17|chr1 (61301270-61300739)
               

               
               1-529, gnl|Mm7|chr4 (97209573-97209055)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-529, gnl\|bosTau2\|chr3 (57344626-57345162)
	1-529, gnl\|Hg17\|chr1 (61301270-61300739)
	1-529, gnl\|Mm7\|chr4 (97209573-97209055)