Non-Coding RNA Search

rpigcf0_001339.y1

Sequence:


               
               ATATGGAATGGGAAAATAAAAAAACCACAGACAATCTGAACCTAGTCATTTATTCTATCT
GGGTAATGGATTTTTCTATCCTCTTTTTTCTGAGATAACACAATTACATTCTAATACCTT
GGGGAAACATTCTTTTTACTTAATTTATTATAAGCAGCATTTGTAAGTGACCAAGAGCTG
GAGCAAAGTAAATTTTTATCCTTAATTGGGATCTTGGGTTCTATTTCACAAAAGCTTCTA
AAACTAGTTGGGCTAGGCTTGGATTTCCAGGTTAATCAACTTCAAGGATGTGTCTTGCAA
AGTGATTTGACCCTAATGGAATCATTTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATGGAATGGGAAAATAAAAAAACCACAGACAATCTGAACCTAGTCATTTATTCTATCT
GGGTAATGGATTTTTCTATCCTCTTTTTTCTGAGATAACACAATTACATTCTAATACCTT
GGGGAAACATTCTTTTTACTTAATTTATTATAAGCAGCATTTGTAAGTGACCAAGAGCTG
GAGCAAAGTAAATTTTTATCCTTAATTGGGATCTTGGGTTCTATTTCACAAAAGCTTCTA
AAACTAGTTGGGCTAGGCTTGGATTTCCAGGTTAATCAACTTCAAGGATGTGTCTTGCAA
AGTGATTTGACCCTAATGGAATCATTTAAAAAAAAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-334, gnl|bosTau2|chr12 (35692595-35692259)
               

               
               1-334, gnl|canFam2|chr22 (46400897-46401590)
               

               
               1-334, gnl|dasNov1|scaffold_1836 (50193-50938)
               

               
               1-334, gnl|hg17|chr13 (91877506-91878167)
               

               
               1-334, gnl|Hg17|chr13 (91878278-91877919)
               

               
               1-334, gnl|loxAfr1|scaffold_37371 (42781-42113)
               

               
               1-334, gnl|mm7|chr14 (110485828-110486480)
               

               
               1-334, gnl|oryCun1|scaffold_213437 (82843-82230)
               

               
               1-334, gnl|panTro1|chr14 (74849156-74849813)
               

               
               1-334, gnl|rheMac2|chr17 (72904570-72905216)
               

               
               1-334, gnl|rn3|chr15 (100943917-100944564)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-334, gnl|bosTau2|chr12 (35692595-35692259)
               

               
               1-334, gnl|canFam2|chr22 (46400897-46401590)
               

               
               1-334, gnl|dasNov1|scaffold_1836 (50193-50938)
               

               
               1-334, gnl|hg17|chr13 (91877506-91878167)
               

               
               1-334, gnl|Hg17|chr13 (91878278-91877919)
               

               
               1-334, gnl|loxAfr1|scaffold_37371 (42781-42113)
               

               
               1-334, gnl|mm7|chr14 (110485828-110486480)
               

               
               1-334, gnl|oryCun1|scaffold_213437 (82843-82230)
               

               
               1-334, gnl|panTro1|chr14 (74849156-74849813)
               

               
               1-334, gnl|rheMac2|chr17 (72904570-72905216)
               

               
               1-334, gnl|rn3|chr15 (100943917-100944564)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-334, gnl\|bosTau2\|chr12 (35692595-35692259)
	1-334, gnl\|canFam2\|chr22 (46400897-46401590)
	1-334, gnl\|dasNov1\|scaffold_1836 (50193-50938)
	1-334, gnl\|hg17\|chr13 (91877506-91878167)
	1-334, gnl\|Hg17\|chr13 (91878278-91877919)
	1-334, gnl\|loxAfr1\|scaffold_37371 (42781-42113)
	1-334, gnl\|mm7\|chr14 (110485828-110486480)
	1-334, gnl\|oryCun1\|scaffold_213437 (82843-82230)
	1-334, gnl\|panTro1\|chr14 (74849156-74849813)
	1-334, gnl\|rheMac2\|chr17 (72904570-72905216)
	1-334, gnl\|rn3\|chr15 (100943917-100944564)