Non-Coding RNA Search

rpigcf0_001631.y1

Sequence:


               
               CTCATTCATAATCATTATTTCCTTCTTATGGAAGTCCCTGGAGAGTTCTATAAAAGTGGA
AATTGAATTCTTTTTCTATTAAAACAGAAACAAAGTCTTTCCTTCAAATCTGGCTGTTCT
TATGTTTTACTGGAATCCTAGATGATAGGGATTTCATTGCAGTTCAATCAAATGCAACTT
ATGTTATTCACAAAATGACACATTGTACCCAGCTAATAGTAATCATAAAAGATTGTGTTC
TTATCTTTGGAATTCATCAATAAGGAATATCCTATTTTGAAACTGATTTCTTCCATTAGC
CACCTAATATAGCCAACAGTGACATTAATTTCATCTCTACCCCTCTACCTCTGAGGATGC
CAAAAAAAAAATATAAAAAGGACTAAAAAGGAAAAAGGGTACCAGTTTGAGGCTTTTATA
CTTGTCATCTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATTCATAATCATTATTTCCTTCTTATGGAAGTCCCTGGAGAGTTCTATAAAAGTGGA
AATTGAATTCTTTTTCTATTAAAACAGAAACAAAGTCTTTCCTTCAAATCTGGCTGTTCT
TATGTTTTACTGGAATCCTAGATGATAGGGATTTCATTGCAGTTCAATCAAATGCAACTT
ATGTTATTCACAAAATGACACATTGTACCCAGCTAATAGTAATCATAAAAGATTGTGTTC
TTATCTTTGGAATTCATCAATAAGGAATATCCTATTTTGAAACTGATTTCTTCCATTAGC
CACCTAATATAGCCAACAGTGACATTAATTTCATCTCTACCCCTCTACCTCTGAGGATGC
CAAAAAAAAAATATAAAAAGGACTAAAAAGGAAAAAGGGTACCAGTTTGAGGCTTTTATA
CTTGTCATCTTAG

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               4-433, gnl|bosTau2|chr24 (4697638-4697215)
               

               
               4-433, gnl|canFam2|chr1 (8574986-8574545)
               

               
               4-433, gnl|dasNov1|scaffold_56316 (1554-1978)
               

               
               4-433, gnl|echTel1|scaffold_262492 (8892-9357)
               

               
               4-433, gnl|hg17|chr18 (69488255-69488667)
               

               
               4-433, gnl|Hg17|chr18 (69488696-69488322)
               

               
               4-433, gnl|loxAfr1|scaffold_11344 (486-1072)
               

               
               4-433, gnl|mm7|chr18 (85836810-85836423)
               

               
               4-433, gnl|Mm7|chr18 (85836402-85836744)
               

               
               4-433, gnl|panTro1|chr17 (66653808-66654219)
               

               
               4-433, gnl|rheMac2|chr18 (67229887-67229469)
               

               
               4-433, gnl|rn3|chr18 (82240407-82240017)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-433, gnl|bosTau2|chr24 (4697638-4697215)
               

               
               4-433, gnl|canFam2|chr1 (8574986-8574545)
               

               
               4-433, gnl|dasNov1|scaffold_56316 (1554-1978)
               

               
               4-433, gnl|echTel1|scaffold_262492 (8892-9357)
               

               
               4-433, gnl|hg17|chr18 (69488255-69488667)
               

               
               4-433, gnl|Hg17|chr18 (69488696-69488322)
               

               
               4-433, gnl|loxAfr1|scaffold_11344 (486-1072)
               

               
               4-433, gnl|mm7|chr18 (85836810-85836423)
               

               
               4-433, gnl|Mm7|chr18 (85836402-85836744)
               

               
               4-433, gnl|panTro1|chr17 (66653808-66654219)
               

               
               4-433, gnl|rheMac2|chr18 (67229887-67229469)
               

               
               4-433, gnl|rn3|chr18 (82240407-82240017)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	4-433, gnl\|bosTau2\|chr24 (4697638-4697215)
	4-433, gnl\|canFam2\|chr1 (8574986-8574545)
	4-433, gnl\|dasNov1\|scaffold_56316 (1554-1978)
	4-433, gnl\|echTel1\|scaffold_262492 (8892-9357)
	4-433, gnl\|hg17\|chr18 (69488255-69488667)
	4-433, gnl\|Hg17\|chr18 (69488696-69488322)
	4-433, gnl\|loxAfr1\|scaffold_11344 (486-1072)
	4-433, gnl\|mm7\|chr18 (85836810-85836423)
	4-433, gnl\|Mm7\|chr18 (85836402-85836744)
	4-433, gnl\|panTro1\|chr17 (66653808-66654219)
	4-433, gnl\|rheMac2\|chr18 (67229887-67229469)
	4-433, gnl\|rn3\|chr18 (82240407-82240017)