Non-Coding RNA Search

rpigcf0_001662.y1

Sequence:


               
               ACTACTTTAACCAAGTGGTTTGACAGCAACTCCTTCTTGAAACTTAGAATAATTACGCAG
AACATAAGACTTCTTTATAAAGAAGCCTTTCTCTGCTGTTCACTGCTGACCTAGAATTTG
AAAGCTGCTTCAATATATATTGGCTCTTCAGAGCCAAACTCGGTTCCACTGATGTATTTT
CCCCCCCTCTGCACAGGGGAGATCAGCATAAAACCCAGCACTTTTACTAATTCCCAACGG
AGCACAGACACCTGGAAGAAAGAAATAATTTTTACCACCTACAGGTTTCCATTGGTGAGC
AGGGAAGAGAAAGAGAACCACTGAGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTACTTTAACCAAGTGGTTTGACAGCAACTCCTTCTTGAAACTTAGAATAATTACGCAG
AACATAAGACTTCTTTATAAAGAAGCCTTTCTCTGCTGTTCACTGCTGACCTAGAATTTG
AAAGCTGCTTCAATATATATTGGCTCTTCAGAGCCAAACTCGGTTCCACTGATGTATTTT
CCCCCCCTCTGCACAGGGGAGATCAGCATAAAACCCAGCACTTTTACTAATTCCCAACGG
AGCACAGACACCTGGAAGAAAGAAATAATTTTTACCACCTACAGGTTTCCATTGGTGAGC
AGGGAAGAGAAAGAGAACCACTGAGACC

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               152-328, gnl|bosTau2|chr6 (25601497-25601673)
               

               
               152-328, gnl|canFam2|chr3 (85686153-85685921)
               

               
               152-328, gnl|dasNov1|scaffold_19044 (18796-18561)
               

               
               152-328, gnl|echTel1|scaffold_246698 (3291-3055)
               

               
               152-328, gnl|hg17|chr4 (27466220-27466458)
               

               
               152-328, gnl|loxAfr1|scaffold_174480 (1854-1621)
               

               
               152-328, gnl|mm7|chr5 (54266812-54267051)
               

               
               152-328, gnl|monDom2|scaffold_10 (10196892-10196632)
               

               
               152-328, gnl|panTro1|chr3 (28039376-28039615)
               

               
               152-328, gnl|rheMac2|chr5 (22582500-22582737)
               

               
               152-328, gnl|rn3|chr14 (60762381-60762142)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-328, gnl|bosTau2|chr6 (25601497-25601673)
               

               
               152-328, gnl|canFam2|chr3 (85686153-85685921)
               

               
               152-328, gnl|dasNov1|scaffold_19044 (18796-18561)
               

               
               152-328, gnl|echTel1|scaffold_246698 (3291-3055)
               

               
               152-328, gnl|hg17|chr4 (27466220-27466458)
               

               
               152-328, gnl|loxAfr1|scaffold_174480 (1854-1621)
               

               
               152-328, gnl|mm7|chr5 (54266812-54267051)
               

               
               152-328, gnl|monDom2|scaffold_10 (10196892-10196632)
               

               
               152-328, gnl|panTro1|chr3 (28039376-28039615)
               

               
               152-328, gnl|rheMac2|chr5 (22582500-22582737)
               

               
               152-328, gnl|rn3|chr14 (60762381-60762142)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	152-328, gnl\|bosTau2\|chr6 (25601497-25601673)
	152-328, gnl\|canFam2\|chr3 (85686153-85685921)
	152-328, gnl\|dasNov1\|scaffold_19044 (18796-18561)
	152-328, gnl\|echTel1\|scaffold_246698 (3291-3055)
	152-328, gnl\|hg17\|chr4 (27466220-27466458)
	152-328, gnl\|loxAfr1\|scaffold_174480 (1854-1621)
	152-328, gnl\|mm7\|chr5 (54266812-54267051)
	152-328, gnl\|monDom2\|scaffold_10 (10196892-10196632)
	152-328, gnl\|panTro1\|chr3 (28039376-28039615)
	152-328, gnl\|rheMac2\|chr5 (22582500-22582737)
	152-328, gnl\|rn3\|chr14 (60762381-60762142)