Non-Coding RNA Search

rpigcf0_002002.y1

Sequence:


               
               AATTCGAATTCCTTTGCACAGCTCTAGGGTAAAGAAAATCCAAACTAAATGAAGAGCAAA
GGCTTCCAAAGCTCAGAGCCCTCCCAGTAACTGGATAAATACAGAGCTAGATTCAAAAGG
TCAGAGCTGTGGGAGGCACGGGGTAACAGGCACCCCTAAACATTCAGGTCACTCTTTAAA
TCAGTCCCTGGAGGCTAATCTGGAAGATCTGGAAAGACTTTCCTACTTTATTATTTTGAT
TACTGTTATAATAATGCTGCATAACAAAACACCCCAAACTCAGTGGCCAACAACAGGCAT
TTATTTTTCTCACTCATGAGGGTTGACTGGGGTTCAGCTGATTTTGGTTGGGCCAGACTG
GACTCCAGGAAGTGGGTTGGGGTTAGGTCTGCTCCACAGAATTTTATTCTCTTTGGACCA
GCAGCTCCCCAAAGCATAGTCTTCTAATAGAGAATCGGAGGGGCTTAGTGGGCAAGCACA
CAGTCCATGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCGAATTCCTTTGCACAGCTCTAGGGTAAAGAAAATCCAAACTAAATGAAGAGCAAA
GGCTTCCAAAGCTCAGAGCCCTCCCAGTAACTGGATAAATACAGAGCTAGATTCAAAAGG
TCAGAGCTGTGGGAGGCACGGGGTAACAGGCACCCCTAAACATTCAGGTCACTCTTTAAA
TCAGTCCCTGGAGGCTAATCTGGAAGATCTGGAAAGACTTTCCTACTTTATTATTTTGAT
TACTGTTATAATAATGCTGCATAACAAAACACCCCAAACTCAGTGGCCAACAACAGGCAT
TTATTTTTCTCACTCATGAGGGTTGACTGGGGTTCAGCTGATTTTGGTTGGGCCAGACTG
GACTCCAGGAAGTGGGTTGGGGTTAGGTCTGCTCCACAGAATTTTATTCTCTTTGGACCA
GCAGCTCCCCAAAGCATAGTCTTCTAATAGAGAATCGGAGGGGCTTAGTGGGCAAGCACA
CAGTCCATGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               324-490, + strand, RNAz p=0.88633

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               324-490, + strand, RNAz p=0.88633

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               30-490, gnl|bosTau2|chr20 (23333819-23334291)
               

               
               30-490, gnl|Hg17|chr20 (37180491-37180973)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-490, gnl|bosTau2|chr20 (23333819-23334291)
               

               
               30-490, gnl|Hg17|chr20 (37180491-37180973)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	30-490, gnl\|bosTau2\|chr20 (23333819-23334291)
	30-490, gnl\|Hg17\|chr20 (37180491-37180973)