Non-Coding RNA Search

rpigcf0_002374.y1

Sequence:


               
               GGGCTGCAGGACAGCTGATTGGCAACACACAATCAATTCTGTTTCCCTTAGATTTTCTCA
TTTATAGCATGAGATATGAGAAGAGGGGGTGGGGAACTGGAATGTTAAATCCAGATTACA
AAAGTTTAATTTCTGGATCTTATATTTATAGCCTGATTGTGAAAAGGGTGAGGAAAACTC
ATTTCTGGGTTATAAGAGCTTGCACAGATATTTTCTCACTATTGTTAGCATGTTATAGAG
TTTATAAGGAAAGCCCAGCCATTGAAGATACCGTCAATGGTTTTAGTAAATTACTTTTTC
TATTGCTTTTAATGATTGATATAAATCCGGTCTCATTTCATTTAGGTCATGGATATGATA
AAGACATAATCCGTTGGTAGTTGAGTATAGGGGTGTCCCAAAGCCTGTGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTGCAGGACAGCTGATTGGCAACACACAATCAATTCTGTTTCCCTTAGATTTTCTCA
TTTATAGCATGAGATATGAGAAGAGGGGGTGGGGAACTGGAATGTTAAATCCAGATTACA
AAAGTTTAATTTCTGGATCTTATATTTATAGCCTGATTGTGAAAAGGGTGAGGAAAACTC
ATTTCTGGGTTATAAGAGCTTGCACAGATATTTTCTCACTATTGTTAGCATGTTATAGAG
TTTATAAGGAAAGCCCAGCCATTGAAGATACCGTCAATGGTTTTAGTAAATTACTTTTTC
TATTGCTTTTAATGATTGATATAAATCCGGTCTCATTTCATTTAGGTCATGGATATGATA
AAGACATAATCCGTTGGTAGTTGAGTATAGGGGTGTCCCAAAGCCTGTGCTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               43-136, - strand, RNAz p=0.879153

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-136, - strand, RNAz p=0.879153

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               12-413, gnl|bosTau2|chr22 (3117664-3118064)
               

               
               12-413, gnl|canFam2|chr23 (16791842-16791365)
               

               
               12-413, gnl|dasNov1|scaffold_116 (195114-195574)
               

               
               12-413, gnl|echTel1|scaffold_312902 (109087-109559)
               

               
               12-413, gnl|hg17|chr3 (30856826-30857307)
               

               
               12-413, gnl|Hg17|chr3 (30857358-30856955)
               

               
               12-413, gnl|loxAfr1|scaffold_525 (15890-15415)
               

               
               12-413, gnl|mm7|chr9 (115630972-115630489)
               

               
               12-413, gnl|Mm7|chr9 (115630435-115630840)
               

               
               12-413, gnl|monDom2|scaffold_7 (86769253-86769766)
               

               
               12-413, gnl|oryCun1|scaffold_211085 (28907-28424)
               

               
               12-413, gnl|panTro1|chr2 (31838725-31839210)
               

               
               12-413, gnl|rheMac2|chr2 (173285288-173285773)
               

               
               12-413, gnl|rn3|chr8 (120473464-120473006)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               12-413, gnl|bosTau2|chr22 (3117664-3118064)
               

               
               12-413, gnl|canFam2|chr23 (16791842-16791365)
               

               
               12-413, gnl|dasNov1|scaffold_116 (195114-195574)
               

               
               12-413, gnl|echTel1|scaffold_312902 (109087-109559)
               

               
               12-413, gnl|hg17|chr3 (30856826-30857307)
               

               
               12-413, gnl|Hg17|chr3 (30857358-30856955)
               

               
               12-413, gnl|loxAfr1|scaffold_525 (15890-15415)
               

               
               12-413, gnl|mm7|chr9 (115630972-115630489)
               

               
               12-413, gnl|Mm7|chr9 (115630435-115630840)
               

               
               12-413, gnl|monDom2|scaffold_7 (86769253-86769766)
               

               
               12-413, gnl|oryCun1|scaffold_211085 (28907-28424)
               

               
               12-413, gnl|panTro1|chr2 (31838725-31839210)
               

               
               12-413, gnl|rheMac2|chr2 (173285288-173285773)
               

               
               12-413, gnl|rn3|chr8 (120473464-120473006)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	12-413, gnl\|bosTau2\|chr22 (3117664-3118064)
	12-413, gnl\|canFam2\|chr23 (16791842-16791365)
	12-413, gnl\|dasNov1\|scaffold_116 (195114-195574)
	12-413, gnl\|echTel1\|scaffold_312902 (109087-109559)
	12-413, gnl\|hg17\|chr3 (30856826-30857307)
	12-413, gnl\|Hg17\|chr3 (30857358-30856955)
	12-413, gnl\|loxAfr1\|scaffold_525 (15890-15415)
	12-413, gnl\|mm7\|chr9 (115630972-115630489)
	12-413, gnl\|Mm7\|chr9 (115630435-115630840)
	12-413, gnl\|monDom2\|scaffold_7 (86769253-86769766)
	12-413, gnl\|oryCun1\|scaffold_211085 (28907-28424)
	12-413, gnl\|panTro1\|chr2 (31838725-31839210)
	12-413, gnl\|rheMac2\|chr2 (173285288-173285773)
	12-413, gnl\|rn3\|chr8 (120473464-120473006)