Non-Coding RNA Search

rpigcf0_002459.y1

Sequence:


               
               GATCCCTTTTATTTCAGAACCTCATGTAGTAGTGCACCACACATATTACAAGATTACAGC
TGGGCTTGGGCAGGATGGGGGTGAATGACTGCCTGGCTGGCTTCCCACATCTTCAGCCCT
GAAGTTTGGTTAAGAAAAAGGTGTCACTAGCTTTCCACAGGGCTTCTTTGTTCATGTGGA
GAGCCCCAGGGTGGAGGCCTGATAAGCCGTCTTCCCATATGGGTGGCATAGTCTTTATGA
CGTAGGTGGCTTGCATTATCAGTGCTCTGAGGTGGGAGGCAGGAAACCAGGACTTTGATT
TTCCTTTGACCTTCAAGAGAACCAGCAGGAGCACCAGCCTCTGCTAAGTTTTTGTGTGTG
TCCCAGAACCTGAGTTTGCTTGGGTCTCCAGATGACATTAGATAGGAAAGGTCTGTGAGC
TGGAGGCCAGGTTGACGTGAGTGGCTGTGTCACATGCAGGTGTGTTGATCATTAACACGG
GCTTTATGATGGCAGTGCTGAGAGTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCCCTTTTATTTCAGAACCTCATGTAGTAGTGCACCACACATATTACAAGATTACAGC
TGGGCTTGGGCAGGATGGGGGTGAATGACTGCCTGGCTGGCTTCCCACATCTTCAGCCCT
GAAGTTTGGTTAAGAAAAAGGTGTCACTAGCTTTCCACAGGGCTTCTTTGTTCATGTGGA
GAGCCCCAGGGTGGAGGCCTGATAAGCCGTCTTCCCATATGGGTGGCATAGTCTTTATGA
CGTAGGTGGCTTGCATTATCAGTGCTCTGAGGTGGGAGGCAGGAAACCAGGACTTTGATT
TTCCTTTGACCTTCAAGAGAACCAGCAGGAGCACCAGCCTCTGCTAAGTTTTTGTGTGTG
TCCCAGAACCTGAGTTTGCTTGGGTCTCCAGATGACATTAGATAGGAAAGGTCTGTGAGC
TGGAGGCCAGGTTGACGTGAGTGGCTGTGTCACATGCAGGTGTGTTGATCATTAACACGG
GCTTTATGATGGCAGTGCTGAGAGTATTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               76-262, - strand, RNAz p=0.969116

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-262, - strand, RNAz p=0.969116

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               7-262, gnl|bosTau2|chr3 (81491164-81491415)
               

               
               7-262, gnl|canFam2|chr25 (48869738-48869963)
               

               
               7-262, gnl|hg17|chr2 (235362409-235362653)
               

               
               7-262, gnl|Hg17|chr2 (235362680-235362417)
               

               
               7-262, gnl|loxAfr1|scaffold_18289 (8624-8379)
               

               
               7-262, gnl|panTro1|chr13 (126078559-126078803)
               

               
               7-262, gnl|rheMac2|chr12 (98548474-98548716)
               


               
               303-459, gnl|bosTau2|chr3 (81491426-81491581)
               

               
               303-459, gnl|canFam2|chr25 (48869552-48869737)
               

               
               303-459, gnl|echTel1|scaffold_114601 (193-15)
               

               
               303-459, gnl|hg17|chr2 (235362213-235362408)
               

               
               303-459, gnl|Hg17|chr2 (235362391-235362229)
               

               
               303-459, gnl|loxAfr1|scaffold_18289 (8826-8625)
               

               
               303-459, gnl|panTro1|chr13 (126078363-126078558)
               

               
               303-459, gnl|rheMac2|chr12 (98548274-98548473)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-262, gnl|bosTau2|chr3 (81491164-81491415)
               

               
               7-262, gnl|canFam2|chr25 (48869738-48869963)
               

               
               7-262, gnl|hg17|chr2 (235362409-235362653)
               

               
               7-262, gnl|Hg17|chr2 (235362680-235362417)
               

               
               7-262, gnl|loxAfr1|scaffold_18289 (8624-8379)
               

               
               7-262, gnl|panTro1|chr13 (126078559-126078803)
               

               
               7-262, gnl|rheMac2|chr12 (98548474-98548716)
               


               
               303-459, gnl|bosTau2|chr3 (81491426-81491581)
               

               
               303-459, gnl|canFam2|chr25 (48869552-48869737)
               

               
               303-459, gnl|echTel1|scaffold_114601 (193-15)
               

               
               303-459, gnl|hg17|chr2 (235362213-235362408)
               

               
               303-459, gnl|Hg17|chr2 (235362391-235362229)
               

               
               303-459, gnl|loxAfr1|scaffold_18289 (8826-8625)
               

               
               303-459, gnl|panTro1|chr13 (126078363-126078558)
               

               
               303-459, gnl|rheMac2|chr12 (98548274-98548473)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	7-262, gnl\|bosTau2\|chr3 (81491164-81491415)
	7-262, gnl\|canFam2\|chr25 (48869738-48869963)
	7-262, gnl\|hg17\|chr2 (235362409-235362653)
	7-262, gnl\|Hg17\|chr2 (235362680-235362417)
	7-262, gnl\|loxAfr1\|scaffold_18289 (8624-8379)
	7-262, gnl\|panTro1\|chr13 (126078559-126078803)
	7-262, gnl\|rheMac2\|chr12 (98548474-98548716)

	303-459, gnl\|bosTau2\|chr3 (81491426-81491581)
	303-459, gnl\|canFam2\|chr25 (48869552-48869737)
	303-459, gnl\|echTel1\|scaffold_114601 (193-15)
	303-459, gnl\|hg17\|chr2 (235362213-235362408)
	303-459, gnl\|Hg17\|chr2 (235362391-235362229)
	303-459, gnl\|loxAfr1\|scaffold_18289 (8826-8625)
	303-459, gnl\|panTro1\|chr13 (126078363-126078558)
	303-459, gnl\|rheMac2\|chr12 (98548274-98548473)