Non-Coding RNA Search

rpigcf0_002625.y1

Sequence:


               
               CCTGGTTTCAAAATATTCATACTTGTAATAGCAGGAAAGTCAGGAAGTAGTAAAACCGCC
CATCTGGATTGAATACAGTCCGGGACAGTAGTTTGTGCATGGTGAGGCAGATAACATTTT
GCAGATTTAAGAGACAGCTGAATCTGATGCCAGTGGATACAAGCTACTGGTGGAAGGCTT
GAAGCAAATCCTTTCAATGCAGCTCAGATTTATGGGAACTACTCAGGAGCTTGTAGGCTT
TGAAGAGGGGCAAACGGGCGCTGATTTGGTTCACAAAGAGCCCGTGTTTACTTTGGTTTA
CCTGGATTCTCACCCCATACTGAGTTTGGCTTCCAGTATGATTATAACCAGCTCCAGCTT
TGGATGCAACCTCTGCTCCATGTCTGATAAGGAGTTAAAGAGAGAAAATAAAAAATGGCA
TAAATAAGTTTCACATGATCTCCAATCAGAGCAATGTGCTGGCTCTGTTTCACTCAATCA
GC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGGTTTCAAAATATTCATACTTGTAATAGCAGGAAAGTCAGGAAGTAGTAAAACCGCC
CATCTGGATTGAATACAGTCCGGGACAGTAGTTTGTGCATGGTGAGGCAGATAACATTTT
GCAGATTTAAGAGACAGCTGAATCTGATGCCAGTGGATACAAGCTACTGGTGGAAGGCTT
GAAGCAAATCCTTTCAATGCAGCTCAGATTTATGGGAACTACTCAGGAGCTTGTAGGCTT
TGAAGAGGGGCAAACGGGCGCTGATTTGGTTCACAAAGAGCCCGTGTTTACTTTGGTTTA
CCTGGATTCTCACCCCATACTGAGTTTGGCTTCCAGTATGATTATAACCAGCTCCAGCTT
TGGATGCAACCTCTGCTCCATGTCTGATAAGGAGTTAAAGAGAGAAAATAAAAAATGGCA
TAAATAAGTTTCACATGATCTCCAATCAGAGCAATGTGCTGGCTCTGTTTCACTCAATCA
GC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-482, gnl|bosTau2|chr1 (74949944-74949468)
               

               
               1-482, gnl|Hg17|chr3 (151548242-151547764)
               

               
               1-482, gnl|Mm7|chr3 (58465694-58465214)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-482, gnl|bosTau2|chr1 (74949944-74949468)
               

               
               1-482, gnl|Hg17|chr3 (151548242-151547764)
               

               
               1-482, gnl|Mm7|chr3 (58465694-58465214)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-482, gnl\|bosTau2\|chr1 (74949944-74949468)
	1-482, gnl\|Hg17\|chr3 (151548242-151547764)
	1-482, gnl\|Mm7\|chr3 (58465694-58465214)