Non-Coding RNA Search

rpigcf0_002792.y1

Sequence:


               
               ACAAAACAGCCCCAAGCAATCTTCATGCCAACAGCACACTGGACTGGCAAATTTTGCTCC
TCTACACCAGGGAGAAGAGCAGTGCACTACGTTCCAAGTAGGCAGATCTTGGGAAGAAAG
GTCACTCTTTCTTCCAAACACAACTGTTAGAACACTCAGTCCACTTTTATGTGAGGAGGA
AGTGAGGAGAGGGACAGTGGTCCAGAGTATGCTACTAGTTAATGGATGTCTATCTGTCTG
GAATCAGTGAGTCAGGGAAAGAAAGTGTGTAGCAGGTTGCAGGAAGTAAGAGATGCTACC
AGGGCTAGAATTCCCAGTGGTCCGGGAGACCAGACACCATCCAATCTTGACTTCACTGCA
AACACCGTGCTTTGGATTGTTGACCTCCAGGTCTCAGGATCTCAGTGGTGTAGGGTACTG
CAGATGTTTAAAACGCAAAAAAGCCCTAAGTAACCTTCACTGAACTTAATTAACGCCACC
CATTTAAGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAACAGCCCCAAGCAATCTTCATGCCAACAGCACACTGGACTGGCAAATTTTGCTCC
TCTACACCAGGGAGAAGAGCAGTGCACTACGTTCCAAGTAGGCAGATCTTGGGAAGAAAG
GTCACTCTTTCTTCCAAACACAACTGTTAGAACACTCAGTCCACTTTTATGTGAGGAGGA
AGTGAGGAGAGGGACAGTGGTCCAGAGTATGCTACTAGTTAATGGATGTCTATCTGTCTG
GAATCAGTGAGTCAGGGAAAGAAAGTGTGTAGCAGGTTGCAGGAAGTAAGAGATGCTACC
AGGGCTAGAATTCCCAGTGGTCCGGGAGACCAGACACCATCCAATCTTGACTTCACTGCA
AACACCGTGCTTTGGATTGTTGACCTCCAGGTCTCAGGATCTCAGTGGTGTAGGGTACTG
CAGATGTTTAAAACGCAAAAAAGCCCTAAGTAACCTTCACTGAACTTAATTAACGCCACC
CATTTAAGGAA

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               7-491, gnl|bosTau2|chr8 (60371325-60370836)
               

               
               7-491, gnl|canFam2|chr11 (75639198-75639599)
               

               
               7-491, gnl|dasNov1|scaffold_1608 (107760-107367)
               

               
               7-491, gnl|hg17|chr9 (118993072-118993463)
               

               
               7-491, gnl|Hg17|chr9 (118993574-118993147)
               

               
               7-491, gnl|loxAfr1|scaffold_2259 (30068-29673)
               

               
               7-491, gnl|mm7|chr4 (68177882-68178257)
               

               
               7-491, gnl|Mm7|chr4 (68178384-68177955)
               

               
               7-491, gnl|oryCun1|scaffold_214326 (47966-48350)
               

               
               7-491, gnl|panTro1|chr11 (103627154-103627546)
               

               
               7-491, gnl|rheMac2|chr15 (16850828-16850420)
               

               
               7-491, gnl|rn3|chr5 (86057078-86057470)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-491, gnl|bosTau2|chr8 (60371325-60370836)
               

               
               7-491, gnl|canFam2|chr11 (75639198-75639599)
               

               
               7-491, gnl|dasNov1|scaffold_1608 (107760-107367)
               

               
               7-491, gnl|hg17|chr9 (118993072-118993463)
               

               
               7-491, gnl|Hg17|chr9 (118993574-118993147)
               

               
               7-491, gnl|loxAfr1|scaffold_2259 (30068-29673)
               

               
               7-491, gnl|mm7|chr4 (68177882-68178257)
               

               
               7-491, gnl|Mm7|chr4 (68178384-68177955)
               

               
               7-491, gnl|oryCun1|scaffold_214326 (47966-48350)
               

               
               7-491, gnl|panTro1|chr11 (103627154-103627546)
               

               
               7-491, gnl|rheMac2|chr15 (16850828-16850420)
               

               
               7-491, gnl|rn3|chr5 (86057078-86057470)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	7-491, gnl\|bosTau2\|chr8 (60371325-60370836)
	7-491, gnl\|canFam2\|chr11 (75639198-75639599)
	7-491, gnl\|dasNov1\|scaffold_1608 (107760-107367)
	7-491, gnl\|hg17\|chr9 (118993072-118993463)
	7-491, gnl\|Hg17\|chr9 (118993574-118993147)
	7-491, gnl\|loxAfr1\|scaffold_2259 (30068-29673)
	7-491, gnl\|mm7\|chr4 (68177882-68178257)
	7-491, gnl\|Mm7\|chr4 (68178384-68177955)
	7-491, gnl\|oryCun1\|scaffold_214326 (47966-48350)
	7-491, gnl\|panTro1\|chr11 (103627154-103627546)
	7-491, gnl\|rheMac2\|chr15 (16850828-16850420)
	7-491, gnl\|rn3\|chr5 (86057078-86057470)