Non-Coding RNA Search

rpigcf0_002837.y1

Sequence:


               
               CGGGCTGCAGGATTCGAATTCCCCTCCCAGTCTCCAGGCCCCACGGGTGAGCCACCCCAG
AGTCCAGGCTGCACTGGAAGCCGTCGAACCCCTAGGAGGCGCTATTCTTCCCCTCACCTT
GGTCACTCGACAGGAGTCCTCCAGCTGAGTGATGATAGTTTGCATGCGGTCATTCCCCGC
CACCAGCATGGAGATGCAGTTACTCAGCTCAGTCTAGATGGGAGGAAGGAGCGGGGGATC
AGCAGAAGACAAAAATAGACTCAAGGCCTGCCCTCTGGGAGGGGCAGCAAAATGGCACCC
TCATGCTCATCTCTTCCAGAAAGAGCCTGTTTCTGAGGCTTAGCTCATTTCCAGAGCAGA
GACTCTCAGTGAGATGAGGCATCCCTCATTTTACAGATGAGGCCCAGAGAGGGGAAGTGA
GCTGCCCAAAAACACAGAGCAATGTGCTGGCAGAGGAGAGGCTTATTTCTAGGAAGAAAA
GGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGCTGCAGGATTCGAATTCCCCTCCCAGTCTCCAGGCCCCACGGGTGAGCCACCCCAG
AGTCCAGGCTGCACTGGAAGCCGTCGAACCCCTAGGAGGCGCTATTCTTCCCCTCACCTT
GGTCACTCGACAGGAGTCCTCCAGCTGAGTGATGATAGTTTGCATGCGGTCATTCCCCGC
CACCAGCATGGAGATGCAGTTACTCAGCTCAGTCTAGATGGGAGGAAGGAGCGGGGGATC
AGCAGAAGACAAAAATAGACTCAAGGCCTGCCCTCTGGGAGGGGCAGCAAAATGGCACCC
TCATGCTCATCTCTTCCAGAAAGAGCCTGTTTCTGAGGCTTAGCTCATTTCCAGAGCAGA
GACTCTCAGTGAGATGAGGCATCCCTCATTTTACAGATGAGGCCCAGAGAGGGGAAGTGA
GCTGCCCAAAAACACAGAGCAATGTGCTGGCAGAGGAGAGGCTTATTTCTAGGAAGAAAA
GGACCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               310-411, - strand, RNAz p=0.536433

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               310-411, - strand, RNAz p=0.536433

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               27-486, gnl|bosTau2|chr2 (79764580-79764121)
               

               
               27-486, gnl|Hg17|chr1 (26070788-26071281)
               

               
               27-486, gnl|Mm7|chr4 (133699822-133699402)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-486, gnl|bosTau2|chr2 (79764580-79764121)
               

               
               27-486, gnl|Hg17|chr1 (26070788-26071281)
               

               
               27-486, gnl|Mm7|chr4 (133699822-133699402)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	27-486, gnl\|bosTau2\|chr2 (79764580-79764121)
	27-486, gnl\|Hg17\|chr1 (26070788-26071281)
	27-486, gnl\|Mm7\|chr4 (133699822-133699402)