Non-Coding RNA Search

rpigcf0_003032.y1

Sequence:


               
               GTAAATTGTTGATAATGCTTGGGTATAAATATTTCAATGTATTGGTTATTCAGAGAATAC
TTTGCCACTTGTGGGTTTTACAAAACTTTGCTTTTCTTGCTTCATCTTCATGCTGCCTAC
CTCAGGCTTTTTGCCTTATTCATTTAAATTCTAACTTGGGAAGTGCATAGGAAGAAATGA
AGCATTCAAATCACTTGAAAAGAGAAGAGAGGCATTCAGCCTTTGTTCACCCCGGCTTTT
GATCATAACTATAATTCTCTGTAAGCAATCCAATAAAACTTCCCATTGAGTTGCACTTGT
GTTTCCTTTGAGCTCGAATTTATAGCCTACTATCAGTAGATTAAAAATCCATTAAAATCT
ATAAGAACAGCAGAAGTTACAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTAAATTGTTGATAATGCTTGGGTATAAATATTTCAATGTATTGGTTATTCAGAGAATAC
TTTGCCACTTGTGGGTTTTACAAAACTTTGCTTTTCTTGCTTCATCTTCATGCTGCCTAC
CTCAGGCTTTTTGCCTTATTCATTTAAATTCTAACTTGGGAAGTGCATAGGAAGAAATGA
AGCATTCAAATCACTTGAAAAGAGAAGAGAGGCATTCAGCCTTTGTTCACCCCGGCTTTT
GATCATAACTATAATTCTCTGTAAGCAATCCAATAAAACTTCCCATTGAGTTGCACTTGT
GTTTCCTTTGAGCTCGAATTTATAGCCTACTATCAGTAGATTAAAAATCCATTAAAATCT
ATAAGAACAGCAGAAGTTACAT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               93-380, gnl|bosTau2|chr5 (53179537-53179823)
               

               
               93-380, gnl|canFam2|chr27 (26233581-26233244)
               

               
               93-380, gnl|dasNov1|scaffold_33524 (44250-44588)
               

               
               93-380, gnl|galGal2|chr1 (62345516-62345170)
               

               
               93-380, gnl|hg17|chr12 (24232075-24232408)
               

               
               93-380, gnl|Hg17|chr12 (24232454-24232173)
               

               
               93-380, gnl|mm7|chr6 (144499380-144499700)
               

               
               93-380, gnl|Mm7|chr6 (144499720-144499485)
               

               
               93-380, gnl|panTro1|chrUn_random (50616738-50617071)
               

               
               93-380, gnl|rheMac2|chr11 (24451570-24451908)
               

               
               93-380, gnl|rn3|chr4 (182305482-182305804)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               93-380, gnl|bosTau2|chr5 (53179537-53179823)
               

               
               93-380, gnl|canFam2|chr27 (26233581-26233244)
               

               
               93-380, gnl|dasNov1|scaffold_33524 (44250-44588)
               

               
               93-380, gnl|galGal2|chr1 (62345516-62345170)
               

               
               93-380, gnl|hg17|chr12 (24232075-24232408)
               

               
               93-380, gnl|Hg17|chr12 (24232454-24232173)
               

               
               93-380, gnl|mm7|chr6 (144499380-144499700)
               

               
               93-380, gnl|Mm7|chr6 (144499720-144499485)
               

               
               93-380, gnl|panTro1|chrUn_random (50616738-50617071)
               

               
               93-380, gnl|rheMac2|chr11 (24451570-24451908)
               

               
               93-380, gnl|rn3|chr4 (182305482-182305804)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	93-380, gnl\|bosTau2\|chr5 (53179537-53179823)
	93-380, gnl\|canFam2\|chr27 (26233581-26233244)
	93-380, gnl\|dasNov1\|scaffold_33524 (44250-44588)
	93-380, gnl\|galGal2\|chr1 (62345516-62345170)
	93-380, gnl\|hg17\|chr12 (24232075-24232408)
	93-380, gnl\|Hg17\|chr12 (24232454-24232173)
	93-380, gnl\|mm7\|chr6 (144499380-144499700)
	93-380, gnl\|Mm7\|chr6 (144499720-144499485)
	93-380, gnl\|panTro1\|chrUn_random (50616738-50617071)
	93-380, gnl\|rheMac2\|chr11 (24451570-24451908)
	93-380, gnl\|rn3\|chr4 (182305482-182305804)