Non-Coding RNA Search

rpigcf0_003271.y1

Sequence:


               
               AGCACTGGACACTCTGTGGTTTAAAACACAGGCTTAGACCCTGTGCCCATGGTTCCTAAA
TTGAATATGGAAGGAGGCTCTGAGGCTAACAAAATACATAAATATGGAATGGCCATTGTG
AAAACTGCTAGAAAGAAGACGAAGGGGCAGTAAGAGTCTATAAAATGTACtttttctttg
gctgtaccagtggcatgtggaagttcccaagccagggactgaacccaagctgctgcagtg
acaacaccagatccttaaccagctatgccacaagggaactccAGGAGTCTATAAATAGGT
GCTCAACATAGTCTGAGTATTTAGAGGATGTTTCCCTGGGGCTGATGAGACCTGAAGGGT
GAGTAACGCCATGAGTTACCAAAAACCAAATGAATGAAGGTCTAACCATCTGCTGAAATT
TAAAACACATTCTCTCTGGTCTGGGAAGCTGATTAGCTTTCTCTTAGACACTTGCCACTT
GCCTCTCAACAAACTTCAGGGTACTTCCCTTTATCACCACTGGAAAAAATATCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCACTGGACACTCTGTGGTTTAAAACACAGGCTTAGACCCTGTGCCCATGGTTCCTAAA
TTGAATATGGAAGGAGGCTCTGAGGCTAACAAAATACATAAATATGGAATGGCCATTGTG
AAAACTGCTAGAAAGAAGACGAAGGGGCAGTAAGAGTCTATAAAATGTACtttttctttg
gctgtaccagtggcatgtggaagttcccaagccagggactgaacccaagctgctgcagtg
acaacaccagatccttaaccagctatgccacaagggaactccAGGAGTCTATAAATAGGT
GCTCAACATAGTCTGAGTATTTAGAGGATGTTTCCCTGGGGCTGATGAGACCTGAAGGGT
GAGTAACGCCATGAGTTACCAAAAACCAAATGAATGAAGGTCTAACCATCTGCTGAAATT
TAAAACACATTCTCTCTGGTCTGGGAAGCTGATTAGCTTTCTCTTAGACACTTGCCACTT
GCCTCTCAACAAACTTCAGGGTACTTCCCTTTATCACCACTGGAAAAAATATCTT

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-172, gnl|bosTau2|chr20 (11502380-11502208)
               

               
               1-172, gnl|Hg17|chr5 (58753505-58753677)
               

               
               1-172, gnl|Mm7|chr13 (106732753-106732592)
               


               
               285-535, gnl|bosTau2|chr20 (11502227-11501983)
               

               
               285-535, gnl|Hg17|chr5 (58753658-58753911)
               

               
               285-535, gnl|Mm7|chr13 (106732611-106732376)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-172, gnl|bosTau2|chr20 (11502380-11502208)
               

               
               1-172, gnl|Hg17|chr5 (58753505-58753677)
               

               
               1-172, gnl|Mm7|chr13 (106732753-106732592)
               


               
               285-535, gnl|bosTau2|chr20 (11502227-11501983)
               

               
               285-535, gnl|Hg17|chr5 (58753658-58753911)
               

               
               285-535, gnl|Mm7|chr13 (106732611-106732376)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	1-172, gnl\|bosTau2\|chr20 (11502380-11502208)
	1-172, gnl\|Hg17\|chr5 (58753505-58753677)
	1-172, gnl\|Mm7\|chr13 (106732753-106732592)

	285-535, gnl\|bosTau2\|chr20 (11502227-11501983)
	285-535, gnl\|Hg17\|chr5 (58753658-58753911)
	285-535, gnl\|Mm7\|chr13 (106732611-106732376)