Non-Coding RNA Search

rpigcf0_003426.y1

Sequence:


               
               GGAGGTAATAAGCTGGAGTGAGGGGACAGATGGACAAGAAAGACAggccatgagatggta
actgttgaagctgggtgatgggtatgtggatgctcattacactCCCTCTACTTTTCTACA
TGTCTGGAGTGACTGCAGGACTTAGCCCTTGCCTCTCTGTACCTTCTGAAGCAGTAAGAC
TCAGGAGGAAAGGGACCTAAAGCTGTGATATTTCACACTTACACATGAAATACTGGAAGG
CCTTGGACTTCACAAGGATGTTAATTCCTATTTGAAGAGAAGAAATGTTAATAGCAATGT
TCATATACAAATATATGTTCCCCTACCACGAACGTCACACATGTAAGCAACCAGGACGTT
TATACCAGGTGGTAAAAGGAAAAGGCCTGCTCACAGAGGGACACCCACACTTATGTCCAG
ACCCCGAGACAAGACTGCACTGCCAACAGGCACTCTGGAAAGAGCCTGGGCAACCGGAGC
CGGGACAGAGCCGAGCAGAACAAAGCTCTGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGTAATAAGCTGGAGTGAGGGGACAGATGGACAAGAAAGACAggccatgagatggta
actgttgaagctgggtgatgggtatgtggatgctcattacactCCCTCTACTTTTCTACA
TGTCTGGAGTGACTGCAGGACTTAGCCCTTGCCTCTCTGTACCTTCTGAAGCAGTAAGAC
TCAGGAGGAAAGGGACCTAAAGCTGTGATATTTCACACTTACACATGAAATACTGGAAGG
CCTTGGACTTCACAAGGATGTTAATTCCTATTTGAAGAGAAGAAATGTTAATAGCAATGT
TCATATACAAATATATGTTCCCCTACCACGAACGTCACACATGTAAGCAACCAGGACGTT
TATACCAGGTGGTAAAAGGAAAAGGCCTGCTCACAGAGGGACACCCACACTTATGTCCAG
ACCCCGAGACAAGACTGCACTGCCAACAGGCACTCTGGAAAGAGCCTGGGCAACCGGAGC
CGGGACAGAGCCGAGCAGAACAAAGCTCTGCTGGC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               362-477, - strand, RNAz p=0.652423

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               362-477, - strand, RNAz p=0.652423

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB032995, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB032995, -

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               135-498, gnl|bosTau2|chr17 (37758039-37758400)
               

               
               135-498, gnl|Hg17|chr12 (112180816-112180399)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               135-498, gnl|bosTau2|chr17 (37758039-37758400)
               

               
               135-498, gnl|Hg17|chr12 (112180816-112180399)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.153069)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)

	135-498, gnl\|bosTau2\|chr17 (37758039-37758400)
	135-498, gnl\|Hg17\|chr12 (112180816-112180399)